Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20634
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27350.1 68414.m03331 expressed protein contains 1 transmembr...    56   2e-08
At1g27330.1 68414.m03329 expressed protein similar to EST gb|AA6...    56   2e-08
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein...    29   2.1  
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein...    29   2.1  
At1g31960.1 68414.m03929 hypothetical protein                          29   3.7  
At5g35010.1 68418.m04132 hypothetical protein similar to At3g243...    28   4.9  
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein...    28   6.5  
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ...    28   6.5  

>At1g27350.1 68414.m03331 expressed protein contains 1 transmembrane
           domain; similar to ribosome associated membrane protein
           RAMP4 GI:4585827 [Rattus norvegicus]; similar to ESTs
           gb|T20610 and gb|AA586199
          Length = 68

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +2

Query: 107 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 241
           KNI  RG VP+TT +K   YPV P LL  F+FVV GS++FQII++
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61


>At1g27330.1 68414.m03329 expressed protein similar to EST
           gb|AA650671 and gb|T20610
          Length = 68

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +2

Query: 107 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 241
           KNI  RG VP+TT +K   YPV P LL  F+FVV GS++FQII++
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61


>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 112 HHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCV 225
           +++    T   Q KR+ ISC +  P S  L S+W  C+
Sbjct: 82  NNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCL 119


>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 112 HHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCV 225
           +++    T   Q KR+ ISC +  P S  L S+W  C+
Sbjct: 82  NNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCL 119


>At1g31960.1 68414.m03929 hypothetical protein
          Length = 173

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 441 NPVSVKETSSHDCTVKGTNGRLRKHSL 361
           NP S++     D  VKG+NG +R HS+
Sbjct: 105 NPTSIRRKLFDDAGVKGSNGVVRFHSV 131


>At5g35010.1 68418.m04132 hypothetical protein similar to At3g24380,
           At5g36840, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790
          Length = 230

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 361 ERVFSEAAISTFNCAIVA*CLFHTYRVKTGRRYIRLLGTLRYRL 492
           ER+    A +TF CAI+  C  + +    G  Y+RL G+  Y L
Sbjct: 115 ERIAPRNAAATFTCAILYICAGNAH---MGGVYLRLFGSNHYAL 155


>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
           contains similarity to CONSTANS homologs
          Length = 373

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 115 HNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDN 234
           H+    T     KR+ I+C +  P S  L S+W  C+  N
Sbjct: 76  HDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLN 115


>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
           (SP:Q92797) {Homo sapiens}
          Length = 1091

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +3

Query: 285 ENTIK*QHYPSKVRHNLHQHLF--VDMRESVFGGGH*YL*LCNRGLMSLSHLQG*NGTPI 458
           ++TI  +  P +VRHN + HL   V   ES+ G       +   G+ S +HL     TP+
Sbjct: 160 DDTINGEVAPKRVRHNTNMHLTQQVQTNESLQGP------VSINGISSGNHLSDSELTPV 213

Query: 459 HKVIRDVEVSIVEFSMNFVSFSI 527
            +++  +   + E      S  I
Sbjct: 214 EQMVSMIGALLAEGDRGAASLEI 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,973,732
Number of Sequences: 28952
Number of extensions: 281185
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)