Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20633
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    27   1.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   7.4  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          25   7.4  

>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 243 KKYMYSLEMQFHPSTANKNPSCIH 172
           +K  Y+L +   PS+  KNPSCI+
Sbjct: 80  EKAPYTLILDKQPSSTEKNPSCIN 103


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +2

Query: 365 RRLISMTNASDLRSP*GNADESANTNCSFTTLLHVSVITESLILNGQLVIITIA*YAFPV 544
           +R+ S   A   RS      +  NT C+F + LH +   E +++  ++    +    F  
Sbjct: 602 KRIKSTKKAPSWRSIIKAFKKRENTRCNFLSSLHATTFREDIVVRPKIKSFVLEQLIFQA 661

Query: 545 RLSY 556
             S+
Sbjct: 662 LFSF 665


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 150 SGCECVYSECTKGFYSPST 206
           SG EC  ++C KG  SP+T
Sbjct: 219 SGKECKAADCVKGHPSPAT 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,645
Number of Sequences: 5004
Number of extensions: 41089
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)