Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20633
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0144 + 1089090-1091390                                           28   7.6  
01_01_0691 - 5328169-5328228,5328300-5328488,5328611-5328768,532...    28   7.6  

>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 540 GNAYYAMVIMTNWPFNINDSVITLT---WSSVVNEQFVF 433
           GN  YA   +TN  + ++  +++LT   W +VV    VF
Sbjct: 391 GNVLYAFKSLTNDNYAVSSGILSLTKCLWKNVVRSPLVF 429


>01_01_0691 -
           5328169-5328228,5328300-5328488,5328611-5328768,
           5329677-5329767,5330359-5330438,5330472-5330533,
           5330603-5330730,5331290-5331508,5331586-5331715,
           5331804-5331870,5331968-5332062,5332150-5332221,
           5332307-5332362,5332485-5332554,5332662-5332735,
           5332820-5332954,5334135-5334314
          Length = 621

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 285 QIYRSRRLASYVH*LRFSGASALHVLL 365
           Q+Y  RR++S  H  R SGA+AL V L
Sbjct: 82  QVYVGRRISSPTHGNRNSGANALEVAL 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,421,081
Number of Sequences: 37544
Number of extensions: 234867
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)