Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20633
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24110.1 68414.m03042 peroxidase, putative similar to peroxid...    28   6.4  
At4g20850.1 68417.m03025 subtilase family protein contains simil...    27   8.4  
At4g03940.1 68417.m00557 expressed protein                             27   8.4  

>At1g24110.1 68414.m03042 peroxidase, putative similar to peroxidase
           ATP26a, GB:CAA72487
          Length = 326

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 430 CEYELLIHNTAPR*RNHRIVDIKWPIGHNNHSII-RIPSEIELFKPAFVSCIAFVF*VLA 606
           C+  +L+ +T PR  + R  DI   +  +   +I RI + +EL  P  VSC   +     
Sbjct: 69  CDASILVAST-PRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATR 127

Query: 607 KQISMI 624
             ISM+
Sbjct: 128 SLISMV 133


>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 228 SLEMQFHPSTANKNPSCIHY 169
           SL++Q H +  NK PSC  Y
Sbjct: 4   SLQLQIHGALINKGPSCTSY 23


>At4g03940.1 68417.m00557 expressed protein 
          Length = 310

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 588 KCNTRDEGRFK*LNLTGNAYYAMVIMTNW--PFNINDSVITLTWSSVVNEQFVFADSSAL 415
           KC    +GR   +   G +YY  V++  W    N   S+++L +S++      FA  S  
Sbjct: 191 KCRRMRQGRKTLIVREGLSYYLSVVLGLWINQTNFLKSLLSLFFSTLKGLSVAFAGGS-- 248

Query: 414 PHGDRRSLAFVM 379
            H   R+L+ ++
Sbjct: 249 -HQSSRNLSLIL 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,927,004
Number of Sequences: 28952
Number of extensions: 201043
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)