Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20632
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.39 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 526 PQKMQVPSLA*TFFRIINEPTAAAIAYGLDKKGTGERNVLI 648
           P    +PS+A    R I++ +A ++A GL  +GT  R V +
Sbjct: 440 PTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAV 480


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 675 RRSTAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSE 565
           ++STA  VKD Y  + +   V   + RS    ++D E
Sbjct: 53  KKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPE 89


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 62 PFCIFNQSCYLFLKQ 18
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,870
Number of Sequences: 438
Number of extensions: 4567
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)