Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20631
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...   109   3e-25
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    61   1e-10
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    49   6e-07
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    40   3e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    40   3e-04
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    31   0.092
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.28 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    29   0.65 
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    29   0.65 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    27   1.5  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   4.6  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   6.1  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score =  109 bits (262), Expect = 3e-25
 Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 433
           +SAAVSKTA APIERVKLL+Q Q  + +      RYKGI + F R   E+G++S WRGN 
Sbjct: 36  VSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNT 95

Query: 434 ANVIRYFPTQALNFAFKDKYKQVF 505
           ANV+RYFPTQALNFAFKDK+K++F
Sbjct: 96  ANVLRYFPTQALNFAFKDKFKKMF 119



 Score = 29.9 bits (64), Expect = 0.28
 Identities = 19/83 (22%), Positives = 36/83 (43%)
 Frame = +2

Query: 260 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 439
           + A S   V  ++  +  L     S +   ++++ G+VD + +  +  GL   +RG   +
Sbjct: 142 AGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPS 201

Query: 440 VIRYFPTQALNFAFKDKYKQVFL 508
           V+     + L F   D  K V L
Sbjct: 202 VVGIVVYRGLYFGMYDTLKPVVL 224



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +1

Query: 538 RYFAGNLASGGAA 576
           ++FAGNLASGGAA
Sbjct: 130 KWFAGNLASGGAA 142


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 31/81 (38%), Positives = 50/81 (61%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
           ++A VS+TAV+P+ER+K++ QVQ+       ++ Y  +    V+I   +GL+ F+RGN  
Sbjct: 29  VAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGT 81

Query: 437 NVIRYFPTQALNFAFKDKYKQ 499
           N +R FP  A+ FA  +  KQ
Sbjct: 82  NCLRAFPYGAVQFATFNMLKQ 102



 Score = 31.9 bits (69), Expect = 0.070
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +2

Query: 269 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 448
           + +T   P + ++   QV  +         YK I  A   I K +G+  F+RG  +N+++
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLK 295

Query: 449 YFPTQALNF 475
             P  ++ +
Sbjct: 296 IIPVMSITW 304


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 29/93 (31%), Positives = 50/93 (53%)
 Frame = +2

Query: 230 VR*GLPGWRISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 409
           V+ G+ G   +  V+K+ VAP++RVK+L Q  H S +  A  R+ G+  A   I    GL
Sbjct: 18  VKSGIAGGT-AGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75

Query: 410 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 508
              ++G+ A + R FP   + F   ++ ++V +
Sbjct: 76  HGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLI 108


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = +2

Query: 281 AVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 451
           AVA I  V  L  L V     Q++  +  Y G  D   +I K +G    +RG    ++  
Sbjct: 16  AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75

Query: 452 FPTQALNFAFKDKYKQVFLAALTRRRSSGVTSLV 553
            P +AL FA  D Y +++     R+ SS   S++
Sbjct: 76  APKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109



 Score = 33.1 bits (72), Expect = 0.030
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 284 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 460
           V P E +K+ LQ V++ SK       Y G VD F +I K++ +L+ + G  A + R+   
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174

Query: 461 QALNFAFKDKYKQVFLAALTR 523
            A  F    K +     A +R
Sbjct: 175 NAGYFGVIQKIRNSLTPASSR 195


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
           +S +   T V P+  ++  LQ Q  S   A    Y G +D F +  K +G    ++G   
Sbjct: 344 LSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSP 400

Query: 437 NVIRYFPTQALNFAFKDKYKQ 499
           N+++  P+ A+++   +  K+
Sbjct: 401 NLLKVAPSVAISYLVYENCKK 421



 Score = 29.5 bits (63), Expect = 0.37
 Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNF 433
           ++ +V++  + P++ +K  +Q   +S+     Q  K I+ +  + + K  G+  ++RG  
Sbjct: 237 MAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVL 292

Query: 434 ANVIRYFPTQALNFAFKDKYKQVFLAALTRR 526
             ++  FP  A +    +  K+ ++  L  R
Sbjct: 293 VGILGMFPYSATDLGTFEGLKRTWIGILASR 323


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 31.5 bits (68), Expect = 0.092
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
           ++  ++     PI+ VK  +Q       ++A + YK  +    +I  + GLL FW G   
Sbjct: 212 VAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATP 265

Query: 437 NVIRYFPTQALNFAFKDKYKQV 502
            + R   +  + F   +K  ++
Sbjct: 266 RLARLILSGGIVFTVYEKVMEI 287


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 332 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 475
           S  I    +Y G++  F  +  EQG++  + G  A+++R  P   + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 344 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 442
           A    Y    DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +2

Query: 272 SKTAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 442
           S   VAP++ VK   Q Q         +      G + +   I   +G+   +RG    +
Sbjct: 19  SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78

Query: 443 IRYFPTQALNFAFKDKYKQVF 505
           + Y P+ ++ F   +K K +F
Sbjct: 79  LGYLPSWSIYFVVYEKCKVLF 99


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 242 LPGWRISAAVSKTA----VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 409
           +P + +S A+S  A    V P+E V++ LQ+Q   K +     Y G  D   +I  + GL
Sbjct: 112 MPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGL 166

Query: 410 LSFWRG 427
               +G
Sbjct: 167 SGIMKG 172


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/82 (21%), Positives = 35/82 (42%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
           IS+ + +  +AP + +K+ +Q+   S +             F    +++G+ + WRGN  
Sbjct: 25  ISSVICRFMIAPFDVIKIRMQITQSSLR-----------PVFKETVQKEGVRALWRGNVV 73

Query: 437 NVIRYFPTQALNFAFKDKYKQV 502
             + Y    A  F    K K +
Sbjct: 74  AELLYLVYGAAEFVAFSKLKHL 95



 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
           I+ A SK  + P++ V   LQ             YK   D F+ I +  G+   +RG   
Sbjct: 201 IAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYRGLSV 252

Query: 437 NVIRYFP 457
           ++++  P
Sbjct: 253 SMLKVAP 259


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 80  YEITPNLLFKNQELVFRDPPSACAATPTSTY 172
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 384 TKASTIPL*RWSAAICLLTCCTWSSSLTRSIGATAV 277
           T+ + + +  WSA I +LT C    SLT S+  T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 368 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 460
           +++    + + +GL  F+RG +  V  Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,602
Number of Sequences: 5004
Number of extensions: 46631
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)