Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20631
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 2e-22
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 6e-10
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 54 1e-07
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 48 7e-06
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 44 1e-04
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 42 3e-04
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.001
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 39 0.003
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 39 0.003
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 38 0.004
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.014
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.018
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.024
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 35 0.055
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.073
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28) 34 0.073
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.073
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.13
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.29
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 32 0.39
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.39
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 31 0.90
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40) 30 1.6
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 30 1.6
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.7
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 29 2.7
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 3.6
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 28 4.8
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 4.8
SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9) 28 4.8
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 6.3
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 8.4
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 27 8.4
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 8.4
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 102 bits (245), Expect = 2e-22
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Frame = +2
Query: 239 GLPGWRISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLS 415
GL G +A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G LS
Sbjct: 14 GLSG--AAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLS 71
Query: 416 FWRGNFANVIRYFPTQALNFAFKDKYKQVF 505
FWRGN AN IRYFPTQALNFAFKD+ K +F
Sbjct: 72 FWRGNLANCIRYFPTQALNFAFKDQVKALF 101
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +2
Query: 356 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 508
+YKG +D ++I K++G +S +G AN++R + F DK+K++++
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGF-DKFKELYV 297
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/81 (43%), Positives = 58/81 (71%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
I+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L +++GN
Sbjct: 43 IAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNGT 96
Query: 437 NVIRYFPTQALNFAFKDKYKQ 499
NVIR FP A+ FA ++YK+
Sbjct: 97 NVIRIFPYSAVQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 61.3 bits (142), Expect = 6e-10
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = +2
Query: 263 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 442
A VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+ S WRGN ANV
Sbjct: 147 AGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGANV 200
Query: 443 IRYFPTQALNFAFKDKYKQV 502
I+ P + F +K K++
Sbjct: 201 IKIAPESGIKFFAYEKAKKL 220
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/84 (23%), Positives = 45/84 (53%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
++ S+T++ P+E +K L ++ + Y+G++ A I +++G+ SF+RG F
Sbjct: 239 MAGVASQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYRGLFP 291
Query: 437 NVIRYFPTQALNFAFKDKYKQVFL 508
+++ P ++ A + K +L
Sbjct: 292 SLLGIIPYAGIDLAVYETLKNFYL 315
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +2
Query: 260 SAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 424
+A +SKTA APIERVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 20 AAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +2
Query: 260 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 439
SA ++++ +P+E VK+L QV + G++ F + K +G+ +FW+GN +
Sbjct: 68 SAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKREGIKAFWKGNGVS 120
Query: 440 VIRYFPTQALNFA 478
IR FP A+ +A
Sbjct: 121 CIRLFPYSAVQYA 133
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 260 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 439
S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G +
Sbjct: 162 STLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKGVTPS 218
Query: 440 VIRYFP 457
+ FP
Sbjct: 219 FLGLFP 224
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/83 (27%), Positives = 41/83 (49%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
I A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G + +RG
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLP 979
Query: 437 NVIRYFPTQALNFAFKDKYKQVF 505
++ P +A+ D + +F
Sbjct: 980 QLLGVSPEKAIKLTTNDFVRGIF 1002
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Frame = +2
Query: 284 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 463
+AP++ VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++GN +R P
Sbjct: 51 IAPVDLVKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGF 109
Query: 464 ALNFA----FKDKYKQVF--LAALTRRRSSGVTSLVIWPPVVP 574
A+ F D + +F T + G +V W P
Sbjct: 110 AVYFGVYELLCDWFSNLFGSRGVATYLMAGGFAGVVSWASTFP 152
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 356 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 475
RYKG++D ++ KE+G++ F RG + ++R F Q L F
Sbjct: 170 RYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGF-LQVLRF 208
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +2
Query: 356 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 499
+Y G+ +I +++GL +++GN N++R P A+ FA +++K+
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +2
Query: 341 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 505
I ++Y G+++AF RI +++G+ +F+RG +I P ++F + K+ F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAF 73
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +2
Query: 260 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 427
S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 431 STLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
IS + A P++ K +Q + I YKG +D RI + +G+ + W+G
Sbjct: 102 ISGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALWKGFTP 158
Query: 437 NVIRYFPTQALNFAFKDK 490
R P L F F ++
Sbjct: 159 YYFRIGPHTVLTFIFLEQ 176
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 359 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLA 511
Y + +A R+ KE+G+L+ WRG +R A A + KQ+ L+
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQLLLS 85
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 427
+S +SK + P + +K +QVQ + Q+Y G+ D F I KE+G + ++G
Sbjct: 38 LSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKG 97
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGIVDAFVRIPKEQGL 409
I+A++++ A PI+ K+ LQ+Q S +A+ D Y+G++ V + K +G+
Sbjct: 23 IAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTMVTLFKTEGM 82
Query: 410 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 505
+ ++G + R ++ D+ K ++
Sbjct: 83 KTMYKGLIPGIHRQLCFASIRIGLYDQVKAMY 114
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 368 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 502
++ AF I + +GLL++++GN A ++R FP A+ F + Y +V
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKV 57
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 287 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 427
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 371 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYK 496
+DA ++IP+ +GL S WRG ++ P + F D+ K
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLK 105
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 34.7 bits (76), Expect = 0.055
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 290 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 469
PI+ K +QVQ + Q A +Y+ + A I + G+ ++G A ++R P
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 470 NFAFKDKYKQV 502
F F + K +
Sbjct: 281 FFGFYEFTKNL 291
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 34.3 bits (75), Expect = 0.073
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 ISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 433
+S+ V +A+A P + VK+ Q + + I YK + AF +I K++G L W G
Sbjct: 122 VSSGVIGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLWTGMK 177
Query: 434 ANVIRYFPTQALNFAFKDKYKQVFLAA 514
V R D K + L A
Sbjct: 178 PTVKRAACISGTQIPTYDHTKHLLLNA 204
Score = 31.1 bits (67), Expect = 0.68
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +2
Query: 149 AATPTSTYSPSEDHI--IEQNVEPRRSGRVR*GLPGWRISAAVSKTAVAPIERVKLLLQV 322
AA + T P+ DH + N E R G V L ++ V+ +P++ V+
Sbjct: 183 AACISGTQIPTYDHTKHLLLNAELMREG-VALHLASALVAGFVATCVASPVDIVRTRFMT 241
Query: 323 QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 448
Q + Y+G +D + + +G+L+ ++G F N R
Sbjct: 242 QPKDTK-GRPLVYQGTLDCIYKTVRHEGILALYKGFFPNWTR 282
>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
Length = 343
Score = 34.3 bits (75), Expect = 0.073
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 389 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLAALTRRRSSGV 541
+P+E L + G ++VI F A+N F+++YK+VF A R R+S V
Sbjct: 263 LPRELYFLYTYVGVLSSVINPFIYGAMNPMFREEYKKVFRIATFRGRNSAV 313
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 34.3 bits (75), Expect = 0.073
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
I+ +S P++ VK Q + +Y G D +I G+ +F +G A
Sbjct: 366 IAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGLLA 425
Query: 437 NVIRYFPTQA 466
++R FPT A
Sbjct: 426 TILRGFPTNA 435
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 389 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 502
+P+E L W G F++VI F A+N AF+++YK++
Sbjct: 272 LPREVYLFYSWIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 33.9 bits (74), Expect = 0.096
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 389 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLAALTRRRSSG 538
+P+E +L W G ++VI F A+N F+D+YK++ L R R SG
Sbjct: 139 LPREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKKL----LRRMRRSG 184
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
+S + A P++ +K+ LQ + K +KG +D F++ + +GL ++G +
Sbjct: 29 VSGMLGCAAGQPLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLRGLYKGMLS 87
Query: 437 NVIRYFPTQALNF 475
++ P+ AL F
Sbjct: 88 PLLMATPSTALTF 100
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
I+ + + P++RVK +LQ++ + Y G VD RI +E G+ ++G
Sbjct: 146 IAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPVDCLRRIYREAGVRGVYKGISV 201
Query: 437 NVIRYFP 457
+R P
Sbjct: 202 TAMRDIP 208
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 290 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 469
P++ +K+ LQ + K YK D F +I + +G+ +RG ++ P +
Sbjct: 58 PLDTIKVRLQAMPLPKP-GEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSIPNTTV 116
Query: 470 NFA 478
F+
Sbjct: 117 LFS 119
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
++ + AV P++ +K LQ+ + + + Y GI+D +I +GL +F++G
Sbjct: 214 LAGMTASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKGAVP 270
Query: 437 NVIRYFP 457
+I P
Sbjct: 271 RMIVIAP 277
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 31.9 bits (69), Expect = 0.39
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 245 PGWRISAAVSKTAVA-----PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 409
P WR + + VA P++ V+ L VQ +S + ++ Y GIV A RI E+G+
Sbjct: 28 PLWRFVSGATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGI 85
Query: 410 LSFWRGNFANVIRYFP 457
++G +++ P
Sbjct: 86 RGLYKGLVPSLVSIAP 101
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 272 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 430
S+ VA ER +L+ Q Q +D RY+G +D+F + +G L +RG+
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 284 VAPIERVKLLLQVQHVSKQIAADQRYK-GIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 457
+ P E +K LQ QH + I+ K G++D ++I + G +RG A R P
Sbjct: 124 LCPAELIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFRGMTATWAREVP 182
>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/61 (37%), Positives = 28/61 (45%)
Frame = +1
Query: 196 RTKCRTSPIRSRSLRTSWLAYLRRRLQDRRSTNRACQAAAPSTARQQADRRRPALQGYRR 375
RT+ R + R R + RR DRR T A T+R+Q DRRR Q RR
Sbjct: 85 RTRARVTSRRQVDRRRTRARVTIRRQVDRRRTR------ARVTSRRQVDRRRTRAQVTRR 138
Query: 376 R 378
R
Sbjct: 139 R 139
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = +1
Query: 196 RTKCRTSPIRSRSLRTSWLAYLRRRLQDRRSTNRACQAAAPSTARQQADRRRPALQGYRR 375
RT+ R + R R + RR DRR T A T R+Q DRRR + RR
Sbjct: 100 RTRARVTIRRQVDRRRTRARVTSRRQVDRRRTR------AQVTRRRQVDRRRTRARVTRR 153
Query: 376 R 378
R
Sbjct: 154 R 154
>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
Length = 368
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 389 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLAALTRRRSSG 538
+P+E +L + G ++VI F A+N FK++YK++ T R G
Sbjct: 267 LPREVYVLYSFLGGLSSVINPFIYGAMNPIFKEQYKKILRPRCTGRIVEG 316
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 365 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 502
G+V + G +RGN A ++R P ++ F ++YK++
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKL 46
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 281 AVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 460
A+ PIE +K LQ+ Y+G++ + KE+G+ +F+R + P
Sbjct: 14 AMNPIEVIKQRLQMY--------GSPYRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPF 65
Query: 461 QALNF 475
Q L+F
Sbjct: 66 QTLHF 70
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 223 RSRSLRTSWLAYLRRRLQDRRSTNRACQAAAPSTARQQADRRRPALQGYRRR 378
R R T W +RR+ + +R R Q + R++ RRR L+ RRR
Sbjct: 669 RLRRRLTGWRRRIRRQRRRKRRRKRRRQRRSRRRRRRRRRRRRSQLRRKRRR 720
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 310 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 411
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 310 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 411
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 310 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 411
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 392 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 508
P+E L W G ++VI F +N F++++K+++L
Sbjct: 815 PRELYLFYSWLGALSSVINPFIYGVMNPMFREEFKRIYL 853
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 310 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 411
A+ S RQQ R RP GY +R R +P+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +1
Query: 184 RSHNRTKCRTSPIRSRSLRTSWLAYLRRRLQDRRSTNRACQAAAPSTARQQADRRRPALQ 363
RS ++ K + RSR +S LRR + RS +R+ + S +R R R +
Sbjct: 289 RSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRRRSRSRSTEHRYRSRSR 348
Query: 364 GYRRRLR 384
RR+ R
Sbjct: 349 SPRRKHR 355
>SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)
Length = 283
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 274 QDRRSTNRACQAAAPSTARQQADRRRPALQGYRRRLRPHPQGAGSP 411
QD++ST++ QA +P ++QQA R+ Q ++ P +P
Sbjct: 129 QDKQSTDQDKQATSPKISKQQAPRQASNKQQDKQATSPKTSKQQAP 174
>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 28.3 bits (60), Expect = 4.8
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 116 ELVFRDPPSA----CAATPTSTYSPSEDHIIEQNVEPRRSGRVR*GLPGWRISAAVSKTA 283
E + RDP + A+P S I EQNVE S + G+ G + T
Sbjct: 269 EALTRDPKESDTNVSRASPDSHLQTVISEIREQNVELVESSPIEAGVDGETPAPDEKSTD 328
Query: 284 VAPIERVKLLLQVQHVSK-QIA 346
VAPI V LQ + ++ QIA
Sbjct: 329 VAPISEVADALQEKEENEPQIA 350
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 290 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 469
P E VK LQ+ + AA Y+G +D + K G+L +RG + + P ++
Sbjct: 60 PTEYVKTQLQLD----EKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASV 115
Query: 470 NFA 478
FA
Sbjct: 116 RFA 118
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +2
Query: 38 ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 181
++ ++ Y C + E +P + + ++D SAC A P TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 86 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 196
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 310 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 411
A+ S RQQ R RP +GY +R R +P+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 65 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 187
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,310
Number of Sequences: 59808
Number of extensions: 398652
Number of successful extensions: 1307
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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