Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20630
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 44 3e-05
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 41 1e-04
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 33 0.039
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 31 0.21
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 30 0.36
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.63
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 1.9
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 27 1.9
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 3.4
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 4.5
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 4.5
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 5.9
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 26 5.9
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 25 7.8
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 511 MDMELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKF 672
MD +K++I F+ +YP L I++ PW+ + ++K+ L V K+KF
Sbjct: 249 MDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSWLDPVVVSKVKF 302
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 41.1 bits (92), Expect = 1e-04
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 511 MDMELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKF 672
MD +KYL + + YYP L I++ PW+ + + ++K + + K+ F
Sbjct: 216 MDYSFVKYLASCLEYYYPQSLGVCILHKSPWIFRSVWNIIKGWIKPEIAAKIVF 269
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 177 LKRVLAHCEKDAKQAADMLWDILTWR 254
L R LA C D+ +A+ L + L WR
Sbjct: 83 LVRFLASCNNDSHEASQKLINTLQWR 108
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 33.1 bits (72), Expect = 0.039
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 526 IKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKM 666
I+ ++ + YYP + + N PW S+AF ++K L V+K+
Sbjct: 189 IRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKI 235
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 529 KYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKF 672
K ++ + + +Y L ++ N+PW + FK++ + EK+KF
Sbjct: 756 KEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKF 803
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +2
Query: 281 EDNIRMDYVKEGVFFPRGRDVDGSLLLVFKSKMHI--KGQRDYDELKKIMIYWFDR---- 442
E+ + ++VK ++F G+D G ++ I K +D +ELK +++Y +
Sbjct: 93 ENGLNQNFVKASMYFIWGQDKKGRAIVFLNLHNFIPPKNTKDMEELKALILYAMENARLF 152
Query: 443 VEREENGKK 469
++ E+N K
Sbjct: 153 LDSEQNAAK 161
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 29.1 bits (62), Expect = 0.63
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 319 DTFFNIVHAYVVLVDVGSSDIF-LQVRMSHSMSAACLASFSQWASTLFRYFSSLVRSKSA 143
D +++ + L+DV + + L +S S+ A + +W+ST + F L S
Sbjct: 580 DIIRSLLLPLITLIDVNTGLSYELFELLSKFDSSTRYALYGEWSSTSMKKFPELKLQNSI 639
Query: 142 GWKSTSFSLRRFSKISAR 89
K T LRR +K + +
Sbjct: 640 TEKETKGILRRLTKTNVK 657
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 238 SHSMSAACLASFSQWASTLFRYFSSLVRSKSAGWKSTSFSLRRFSK 101
S + CLA+ S W TLF+ +S++V + + LR F+K
Sbjct: 147 SKDLETTCLAT-SIWDETLFKAWSAIVYTLIPNTPTLESHLREFAK 191
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 54 NRFISNHGYCGGRAEIFENRLKENDVDFHPADLERTRDEKYL-KRVLAHCEKDAKQAADM 230
+R G C AE E K+N FHP + T DE +L R L EK A +
Sbjct: 243 DRAFGPFGRCAPLAEFGE---KDNPYYFHPFTVLET-DENFLYSRPLNQAEKTATSTNVL 298
Query: 231 LW 236
+W
Sbjct: 299 IW 300
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 108 NRLKENDVDFHPADLERTRDEKYL 179
N + E+ VD HPA + +RDE YL
Sbjct: 173 NDVTESAVDDHPATRKLSRDELYL 196
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 263 RHFPPGKNVPQHVGSLLSVFLAMG 192
RHFP G + ++G L+ VF+ G
Sbjct: 401 RHFPLGVSALPYIGILVGVFIGCG 424
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 213 KQAADMLWDILTWRKMSELPTSTRTTYAWTMLKKVSS 323
K+ ++WD + + ELP ST AW + V S
Sbjct: 250 KKGGILIWDTQSHEVVVELPYSTVVALAWQPFENVLS 286
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 326 PRGRDVDGSLLLVFKSK 376
P RDV GSL+ +FKSK
Sbjct: 370 PTDRDVVGSLISIFKSK 386
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 197 MGQHPLQVLLISRSL*VGRVEVYIVFFETILKNLR 93
+G + + R+L VGR +V +V ETI+K +R
Sbjct: 216 LGSDAVLATSVWRNLFVGRPDVDLVILETIVKFIR 250
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 69 NHGYCGGRAEIFENRLKENDVDFHP 143
+HGY G R+ F +L E +VD P
Sbjct: 22 SHGYVGNRSATFPLQLHEWEVDVVP 46
>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -2
Query: 490 HIKEHADFFTILFSLDPIEPVYHDFFQLVIVPLAFDVHFGFEDEEETAIHVSAPREEDTF 311
HIK+ AD+ ++FS +E + D ++ I + + F + + VS + D+F
Sbjct: 93 HIKKEADYDPLVFSAHQLETIIED--EIEIWMYKYKTPWFFRNRVYRQLVVSVMLDPDSF 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,991
Number of Sequences: 5004
Number of extensions: 68669
Number of successful extensions: 211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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