Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20630
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 36 0.040
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 35 0.053
02_05_0770 - 31623415-31623960,31624467-31624709,31624808-316249... 35 0.070
03_06_0694 - 35596483-35597082 33 0.21
09_02_0102 - 4295329-4295366,4295622-4295702,4295946-4296252,429... 32 0.49
06_03_0709 - 23759162-23759455,23759681-23759761,23759847-237599... 31 0.65
05_03_0225 - 10572223-10572465,10572617-10572862,10573140-105732... 31 0.86
12_01_0450 - 3552701-3552865,3552971-3553195,3553306-3553473,355... 31 1.1
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 31 1.1
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347... 30 1.5
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 30 2.0
03_05_0739 + 27271404-27271988,27272265-27272411 30 2.0
12_01_0578 - 4731024-4731134,4731200-4731337,4732438-4732500,473... 29 2.6
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 29 2.6
02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460 29 2.6
08_02_0934 + 22747742-22748644 29 4.6
02_05_0775 + 31681720-31681953,31682106-31682246,31682357-316824... 29 4.6
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 28 6.1
08_02_0637 + 19571677-19571943,19572036-19572176,19572260-195723... 28 8.0
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 28 8.0
07_03_0977 + 23092563-23092643,23092736-23092773,23092861-230930... 28 8.0
07_03_0404 + 17764811-17764954,17765048-17765188,17765277-177653... 28 8.0
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213 28 8.0
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 28 8.0
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 35.5 bits (78), Expect = 0.040
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 556 YYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKFV 675
YYP + I+ N P + + +K++K L AK EK+KF+
Sbjct: 133 YYPGIIAVAILSNTPRIFESFWKIIKHFLEAKMSEKVKFL 172
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 35.1 bits (77), Expect = 0.053
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 556 YYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKFV 675
+YP L I++N P V A +KVVK L K+++K+ FV
Sbjct: 142 HYPERLAIGILFNPPKVFEAFWKVVKHFLDPKSIQKVNFV 181
>02_05_0770 -
31623415-31623960,31624467-31624709,31624808-31624906,
31625058-31625234,31625441-31625512
Length = 378
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 511 MDMELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKFVTKD 684
+ + + K + + +YP L I+YN P + +K+ +L K K+KFV D
Sbjct: 160 ISLHVTKLTADVLQGHYPERLGVAILYNAPKFFESFWKIASPILEPKTFNKVKFVYPD 217
>03_06_0694 - 35596483-35597082
Length = 199
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 499 WPQYMDMELIKYLITL--FKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKF 672
W Y + ++ Y+ L + YYP L + + ++P+V AA+K++ + +K F
Sbjct: 96 WGYYGNCDIRAYVAALEIMQNYYPERLGRVFLIHVPYVFMAAWKIIYPFIDDNTKKKFVF 155
Query: 673 V 675
V
Sbjct: 156 V 156
>09_02_0102 -
4295329-4295366,4295622-4295702,4295946-4296252,
4296616-4296696,4296818-4296919,4297358-4297396,
4297453-4297548,4297624-4297683,4297942-4297995,
4298230-4298307,4298577-4298630,4298705-4298788,
4300457-4300485,4300666-4300720
Length = 385
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 559 YPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMK 669
YP I N P+V SA +KVVK LL + K+K
Sbjct: 196 YPEKTETYFIVNAPYVFSACWKVVKPLLQERTKRKIK 232
>06_03_0709 -
23759162-23759455,23759681-23759761,23759847-23759948,
23760068-23760163,23760256-23760315,23760496-23760549,
23760657-23760695,23761102-23761179,23761476-23761529,
23761797-23761880,23763447-23763475,23763602-23763659
Length = 342
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 517 MELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKM 666
M+++ + T+ YP I N P++ SA +KVVK LL + +K+
Sbjct: 183 MKILTAISTVDDLNYPEKAETYYIVNAPYIFSACWKVVKPLLQERTRKKV 232
>05_03_0225 -
10572223-10572465,10572617-10572862,10573140-10573241,
10574234-10574413,10575076-10575156
Length = 283
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 517 MELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKFV 675
+ L++ + + +YP ++ I+ N P + + +K+V + K EK+KFV
Sbjct: 168 LPLLRECTHIIQNHYPGLISVAILSNPPRIFESFWKIVCYFIEPKLKEKVKFV 220
>12_01_0450 -
3552701-3552865,3552971-3553195,3553306-3553473,
3554514-3554629,3554735-3554887,3554978-3555121,
3556667-3557276
Length = 526
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 389 GQRDYDELKKIMIYWFDRVEREENGKKISMFFDMDGTGLST 511
G DY E ++ +++EREEN FFD DG+G T
Sbjct: 404 GTIDYGEFLAATLH-MNKLEREENLVSAFTFFDKDGSGFIT 443
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 538 ITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKFVT 678
+ L + YP F+ I N+PW AA K+V L + K+ F T
Sbjct: 395 LALLQDNYPEFIAKKIFINVPWWYIAANKMVSPFLTQRTKSKIIFCT 441
>11_01_0449 -
3473662-3475049,3476026-3476128,3476215-3476439,
3476689-3476856,3477414-3477529,3477640-3477792,
3477879-3478022,3478980-3479583
Length = 966
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 389 GQRDYDELKKIMIYWFDRVEREENGKKISMFFDMDGTGLST 511
G DY E ++ +++EREEN FFD DG+G T
Sbjct: 402 GTIDYGEFIAATLH-MNKLEREENLVSAFSFFDKDGSGFIT 441
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 398 DYDELKKIMIYWFDRVEREENGKKISMFFDMDGT 499
D+ E + WF+ V GK+I +F D DGT
Sbjct: 77 DWMEKHPSALAWFESVAAAAKGKEIVVFLDYDGT 110
>03_05_0739 + 27271404-27271988,27272265-27272411
Length = 243
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +2
Query: 296 MDYVKEGV-FFPRGRDVDGS----LLLVFKSKMHIKGQRDYDELKKIMIYWFDRVEREEN 460
M+ + E V FF +D +G L+L +++ + G DY E + I+ R+ + +
Sbjct: 89 MELLMEAVSFFTLLQDSNGGNGEFLILHWQADVDGNGYLDYGEFVAVTIH-LQRLSNDNH 147
Query: 461 GKKISMFFDMDGTG 502
+ +FFD DG+G
Sbjct: 148 LRTAFLFFDKDGSG 161
>12_01_0578 -
4731024-4731134,4731200-4731337,4732438-4732500,
4732596-4732667,4732751-4732891,4733011-4733126,
4733222-4733255,4734151-4734261
Length = 261
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 434 FDRVEREENGKKISMFFDMDGT 499
FD + GKKI++F D DGT
Sbjct: 97 FDEITSNAQGKKIALFLDYDGT 118
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 322 LPAGQRRGWQSPPRLQIQNAHQRPKGL*RVEKNH 423
LPA R + PP +Q+Q HQ+P G+ V H
Sbjct: 102 LPAVAGRRFFPPPAMQMQYYHQQPDGVAMVGSGH 135
>02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460
Length = 499
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 389 GQRDYDELKKIMIYWFDRVEREENGKKISMFFDMDGTGLST 511
G DYDE ++ +++EREE+ +FD DG+G T
Sbjct: 383 GTIDYDEFIAATVH-LNKLEREEHLLAAFAYFDRDGSGYIT 422
>08_02_0934 + 22747742-22748644
Length = 300
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 432 GSIGSSEKRMVKKSACSLIWTVLASVHGHGTNQILNNPI*MLLSVFPQLHHYLQHA 599
G ++ KR +++ + T +A HGHG L +P + +P HH+ + A
Sbjct: 115 GGHQNAHKRERQRAKHAQFQTAMAMHHGHGQYYPLPDPYAAAFAAYPGHHHHHRFA 170
>02_05_0775 +
31681720-31681953,31682106-31682246,31682357-31682428,
31682513-31682590,31682683-31682736,31682862-31682963,
31683112-31683189,31683322-31683391,31683592-31683662,
31683826-31683918,31684029-31684109
Length = 357
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 434 FDRVEREENGKKISMFFDMDGT 499
F+ + + GKKI MF D DGT
Sbjct: 88 FEEIAAKSRGKKIVMFMDYDGT 109
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 502 PQYMDMELIKYLITLF-KCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAV 657
P ++ E I Y+ +++ K + +NY +++ W L A + K L+P K +
Sbjct: 208 PPWLSEEDISYVASVYAKTGFAGGINYYRCFDLNWELMAPWTGAKVLVPTKFI 260
>08_02_0637 +
19571677-19571943,19572036-19572176,19572260-19572331,
19572425-19572523,19572615-19572668,19572804-19572905,
19573169-19573246,19573449-19573518,19573644-19573807,
19574629-19574694
Length = 370
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 434 FDRVEREENGKKISMFFDMDGT 499
F+++ GKKI MF D DGT
Sbjct: 99 FEQIVAASKGKKIVMFLDYDGT 120
>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = -2
Query: 271 GSSDIFLQVRMSHSMSAACLA-----SFSQWAS---TLFRYFSSLV 158
GS D+F + S S S C+A + S W + T+ R+F SL+
Sbjct: 1218 GSKDLFFPTQFSQSFSTQCMACLWKQNLSYWRNPPYTVVRFFFSLI 1263
>07_03_0977 +
23092563-23092643,23092736-23092773,23092861-23093088,
23093307-23093527,23093640-23093797,23093907-23094339,
23094442-23095394
Length = 703
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 195 HCEKDAKQAADMLWDILTWRKMSELPTSTRTTYAWTM 305
HCE DA+ + D+++ ++ ++LPT+ T + T+
Sbjct: 662 HCEVDAQSSPDLMFTARSYYTGAQLPTNLPRTKSVTL 698
>07_03_0404 +
17764811-17764954,17765048-17765188,17765277-17765348,
17765460-17765588,17765705-17765761,17765831-17765932,
17766186-17766326,17766493-17766585,17766780-17766869
Length = 322
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 434 FDRVEREENGKKISMFFDMDGT 499
FD + GKKI++F D DGT
Sbjct: 58 FDHIVAYGKGKKIALFLDYDGT 79
>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
Length = 491
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +2
Query: 137 PPGRLRANER*EVPEEGAGPLRERR*AGCRHAVGHSYLEENVGASNINEDNIR 295
PP RLR N +V GA +R R G A H Y + + A E +R
Sbjct: 294 PPARLRVNPNADVALAGADFVRNHRVLGVDFASVHVYPDTWLPAGATKEAQLR 346
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 538 ITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMKFVT 678
+ L + YP F+ + N+PW AA K++ L + K F +
Sbjct: 424 VALLQDNYPEFIAKKVFINVPWWYLAANKMMSPFLTQRTKSKFIFAS 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,456
Number of Sequences: 37544
Number of extensions: 470266
Number of successful extensions: 1259
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -