Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20630
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)                    29   4.7  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    28   8.2  
SB_51870| Best HMM Match : TPR_2 (HMM E-Value=1.1e-10)                 28   8.2  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 187  CWP--IARKTLSRLPTCCGTFLPGGKCRSFQHQRGQHTHGLC*RRCLLPAGQRRGWQSPP 360
            CWP   A    ++    C   +PG  C ++   R  +  G C      PAG+ +  QSPP
Sbjct: 1307 CWPGTYADTEYNQFRNNCKPCIPGMYCPTY---RLSYPSGNCSEGYYCPAGETK--QSPP 1361

Query: 361  RLQIQNAHQRPKG 399
              Q Q  H  P+G
Sbjct: 1362 DKQCQPGHYCPEG 1374


>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 260 VGASNINEDNIRMDYVKEGVFFPRGRDVDGSLLLVFK 370
           +G S+I EDN+     + G  FP   D DG+ +  +K
Sbjct: 114 LGYSDITEDNLNRKLFESGFLFPHNIDKDGNTIAAWK 150



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +1

Query: 613 AAFKVVKTLLPAKAVEKMKFVTKD 684
           AA+K+VKT L   AV  +KFV+KD
Sbjct: 147 AAWKIVKTWLSPNAVRIIKFVSKD 170


>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
          Length = 1466

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 141  PADLERTRDEKYLKRVLAHCEKDAKQAADMLWDILT--WRKMSELPTSTRTTYAWTMLKK 314
            PAD  +T+D + + R      +DA +   +L+  +T  W   + + +ST TT + + L  
Sbjct: 1329 PADHSQTKDYRQVARYRMRSIRDAAELFVLLYKFITKSWESSNCIGSSTTTTDSSSKLTD 1388

Query: 315  VSSSRGA 335
                R A
Sbjct: 1389 AKRERWA 1395


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 258 MSELPTSTRTTYAWTMLKKVSSSRGAETWMAVXXXXXNPKCTSKAKGTMTS 410
           +S+  +S R+  +W +L  +S +R   TWM       +P  + K     TS
Sbjct: 604 ISDSLSSLRSRASWRLLSDISWTRSVFTWMTASTSVTDPIASLKPLSFATS 654


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 243 LTWRKMSELPTSTRTTYAWTMLKKVSSSRGAETWMAV 353
           L W+K +  PT   T  +  +  K +  R AE W+++
Sbjct: 202 LLWKKAANTPTEVPTMSSADIQSKSAKKRAAEKWVSL 238


>SB_51870| Best HMM Match : TPR_2 (HMM E-Value=1.1e-10)
          Length = 279

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 30  ISCCLQ*YNRFISNHGYCGGRAEIFENRLKENDVDFHPADLERTRDEKYLKRVLAHCEK 206
           +  CL     F+  HG+     E+FE+ L+  +    P+D +       L +  A C K
Sbjct: 144 LGVCLDGLGTFLLTHGHAEQATEVFEHALEIAEEVLGPSDDQTLVVMNNLAKAYAECGK 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,237,353
Number of Sequences: 59808
Number of extensions: 535263
Number of successful extensions: 1245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)