Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20630
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-16|AAN63464.1|  275|Caenorhabditis elegans Hypothetical p...    39   0.004
U32305-15|AAK18858.4|  567|Caenorhabditis elegans Hypothetical p...    39   0.004
Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical pr...    32   0.34 
AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical...    32   0.34 
Z46266-2|CAA86410.1|   99|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF016676-4|AAG24104.1|  463|Caenorhabditis elegans Cytochrome p4...    29   3.1  
U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical pr...    25   6.0  
Z32682-6|CAA83614.1|  200|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U32305-16|AAN63464.1|  275|Caenorhabditis elegans Hypothetical
           protein B0336.11b protein.
          Length = 275

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +1

Query: 511 MDMELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEK----MKFVT 678
           M  + +K++I   K YYP  +  I+I+  P +L+A++KV+ + L + A  +    + FVT
Sbjct: 168 MSFDAMKFIIHSSKYYYPNSIESILIFENPAILNASWKVIGSWLESSAASQRHDLLTFVT 227

Query: 679 K 681
           K
Sbjct: 228 K 228



 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 317 VFFPRGRDVDGSLLLVFKSKMHIKGQRDYDELKKIMIYWFDRVEREENG-KKISMFFDMD 493
           + +  G+D+    +L      +  G    D  +K+  +W +R   E  G + +++F DM 
Sbjct: 105 LMYLHGKDLQNRHMLWIMMNKYKNGD---DGFEKLFTFWIERHYMEYKGCQPLTVFIDMT 161

Query: 494 GTGLSTWTWN 523
           GTGL   +++
Sbjct: 162 GTGLKNMSFD 171


>U32305-15|AAK18858.4|  567|Caenorhabditis elegans Hypothetical
           protein B0336.11a protein.
          Length = 567

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +1

Query: 511 MDMELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEK----MKFVT 678
           M  + +K++I   K YYP  +  I+I+  P +L+A++KV+ + L + A  +    + FVT
Sbjct: 168 MSFDAMKFIIHSSKYYYPNSIESILIFENPAILNASWKVIGSWLESSAASQRHDLLTFVT 227

Query: 679 K 681
           K
Sbjct: 228 K 228



 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 317 VFFPRGRDVDGSLLLVFKSKMHIKGQRDYDELKKIMIYWFDRVEREENG-KKISMFFDMD 493
           + +  G+D+    +L      +  G    D  +K+  +W +R   E  G + +++F DM 
Sbjct: 105 LMYLHGKDLQNRHMLWIMMNKYKNGD---DGFEKLFTFWIERHYMEYKGCQPLTVFIDMT 161

Query: 494 GTGLSTWTWN 523
           GTGL   +++
Sbjct: 162 GTGLKNMSFD 171


>Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 520 ELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKT 636
           EL+  ++ L++C   YF NYII+ +  +  S  F++ KT
Sbjct: 848 ELVGDVMELYECISTYFWNYIILKSRKYRFSKFFEISKT 886


>AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 520 ELIKYLITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKT 636
           EL+  ++ L++C   YF NYII+ +  +  S  F++ KT
Sbjct: 848 ELVGDVMELYECISTYFWNYIILKSRKYRFSKFFEISKT 886


>Z46266-2|CAA86410.1|   99|Caenorhabditis elegans Hypothetical
           protein C07B5.3 protein.
          Length = 99

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 344 PRLCPAGRRHLL*HSPCVCCPR*CW 270
           P +C AG    +   PCVCC + CW
Sbjct: 32  PNVCNAGEETAM---PCVCCKKACW 53


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 664 FFQRPWQVTMSSPL*KPPTKPRACCK 587
           FF RP  +T++S   +PP +P   CK
Sbjct: 431 FFSRPRDITITSRCQRPPERPSTSCK 456


>AF016676-4|AAG24104.1|  463|Caenorhabditis elegans Cytochrome p450
           family protein 33C6 protein.
          Length = 463

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 272 WKLRHFPPGKNVPQHVGSLLSVFL 201
           WK RH PPG      +G++L+V L
Sbjct: 20  WKRRHLPPGPTPLPFMGNILAVIL 43


>U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical
           protein F56A3.1 protein.
          Length = 783

 Score = 25.0 bits (52), Expect(2) = 6.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 438 IGSSEKRMVKKSACSLIWTVLASVHGHGTNQILNNPI 548
           + S++K + K S   L+      +HG+G    +N PI
Sbjct: 92  VSSAKKEIEKNSKTELLAKGFDDIHGNGIFYPINEPI 128



 Score = 21.4 bits (43), Expect(2) = 6.0
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = +3

Query: 270 PTSTRTTYAWTMLKKVSSSRGAETWM 347
           PT+ + T  W    + SS +    W+
Sbjct: 60  PTTPKNTTKWAETLQKSSEKAGRDWL 85


>Z32682-6|CAA83614.1|  200|Caenorhabditis elegans Hypothetical
           protein M04D8.6 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 535 LITLFKCYYPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMK 669
           LI     YYPYFLN  ++     +  A F +V TL   K++++ +
Sbjct: 48  LIYYIPKYYPYFLNQFLL----TIAFALFNIVVTLKMKKSLQRFQ 88


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 412 EKNHDILVR*GRARREW*KNQHVL*YGRYWPQYMDMELIKYLITLFKCYY 561
           E N D  +R  +A R W    H+    R+W  Y+     K L T+F+ +Y
Sbjct: 121 ELNQDFELRYMKAHRSW-PQIHIY---RHWLYYLQTNSFKSLETIFRRHY 166


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 559 YPYFLNYIIIYNMPWVLSAAFKVVKTLLPAKAVEKMK 669
           YP ++N + + N P  ++  +K +  LLP +   K++
Sbjct: 176 YPEWINTLFLINAPSFMTLLWKAIGPLLPERTRNKVR 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,912
Number of Sequences: 27780
Number of extensions: 396363
Number of successful extensions: 1125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)