Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20629
         (571 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015ADE50 Cluster: hypothetical protein NEMVEDRAFT_...    36   0.51 
UniRef50_UPI0000D56527 Cluster: PREDICTED: similar to Cysteine a...    34   2.0  
UniRef50_Q4UE69 Cluster: Splicing factor, putative; n=2; Theiler...    34   2.0  
UniRef50_Q14990 Cluster: Outer dense fiber protein 1; n=21; Mamm...    34   2.7  
UniRef50_A7T6H4 Cluster: Predicted protein; n=3; Eukaryota|Rep: ...    33   3.6  
UniRef50_A4VDR7 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_A5DYD8 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_Q5DAV3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.7  
UniRef50_UPI0000D9D22B Cluster: PREDICTED: hypothetical protein;...    33   6.2  
UniRef50_Q1LBS1 Cluster: Rieske (2Fe-2S) region; n=1; Ralstonia ...    33   6.2  
UniRef50_Q057X0 Cluster: NADH-quinone oxidoreductase; n=1; Buchn...    33   6.2  
UniRef50_Q8IIL3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_UPI0000DBF85A Cluster: UPI0000DBF85A related cluster; n...    32   8.2  
UniRef50_Q380W9 Cluster: Putative uncharacterized protein; n=1; ...    32   8.2  
UniRef50_Q5A7T4 Cluster: Putative uncharacterized protein; n=2; ...    32   8.2  

>UniRef50_UPI00015ADE50 Cluster: hypothetical protein
           NEMVEDRAFT_v1g69851; n=1; Nematostella vectensis|Rep:
           hypothetical protein NEMVEDRAFT_v1g69851 - Nematostella
           vectensis
          Length = 138

 Score = 36.3 bits (80), Expect = 0.51
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
 Frame = -3

Query: 236 CKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRH---HHGLHX-FH-NC-----LDCYCLYK 87
           C+ H  CH  C ++ H  Y+   +C  +S  H   H   H  +H NC      DC+C Y 
Sbjct: 2   CRCHSNCHCRCHSNCHCRYHSNCHCRYHSNCHCRCHSNCHCRYHSNCHCRYHSDCHCRYH 61

Query: 86  NLCIRYLYHHCSSLVHNN 33
           + C    +  C    H+N
Sbjct: 62  SNCHCRYHSDCHCRCHSN 79



 Score = 35.5 bits (78), Expect = 0.88
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -3

Query: 236 CKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHH 57
           C+ H  CH  C ++ H  Y+   +C     R+H   H  ++  +C+C Y + C    + +
Sbjct: 26  CRYHSNCHCRCHSNCHCRYHSNCHC-----RYHSDCHCRYHS-NCHCRYHSDCHCRCHSN 79

Query: 56  CSSLVHNN 33
           C    H+N
Sbjct: 80  CHCRYHSN 87


>UniRef50_UPI0000D56527 Cluster: PREDICTED: similar to Cysteine and
           glycine-rich protein 2 (Cysteine-rich protein 2) (CRP2)
           (Smooth muscle cell LIM protein) (SmLIM); n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to Cysteine and
           glycine-rich protein 2 (Cysteine-rich protein 2) (CRP2)
           (Smooth muscle cell LIM protein) (SmLIM) - Tribolium
           castaneum
          Length = 235

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = -3

Query: 236 CKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHH 57
           CK    C D C     +   E  +     L  H   H    C  CYC  K+LC++ +Y  
Sbjct: 157 CKRCCSCEDRC-----KRCGEKVFAAEKVLTSHGSYHL--GCFSCYCCCKSLCVKTMYEA 209

Query: 56  CSSL 45
           C  +
Sbjct: 210 CGEI 213


>UniRef50_Q4UE69 Cluster: Splicing factor, putative; n=2;
           Theileria|Rep: Splicing factor, putative - Theileria
           annulata
          Length = 369

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 164 NNDTRYNSGGRSYNTSRDRVDESYKKTYRNEALLTIQTESMEVEEDHQKEKE 319
           N++ R NS   SY++SR R    Y   YR++     +    E E DH +E+E
Sbjct: 163 NHEKRENSNDSSYSSSRTRTRNHYDHKYRDDP----ERTKRESETDHGRERE 210


>UniRef50_Q14990 Cluster: Outer dense fiber protein 1; n=21;
           Mammalia|Rep: Outer dense fiber protein 1 - Homo sapiens
           (Human)
          Length = 250

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -3

Query: 236 CKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHH-GLHXFHNCLDCYCLYKNLCIR 72
           C   L  H +CC   H     Y YC+  S R    GL   + C  C C YK  C+R
Sbjct: 35  CLCDLYMHPYCCCDLH----PYPYCLCYSKRSRSCGLCDLYPC--CLCDYKLYCLR 84


>UniRef50_A7T6H4 Cluster: Predicted protein; n=3; Eukaryota|Rep:
           Predicted protein - Nematostella vectensis
          Length = 82

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 215 HDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSSLVHN 36
           H  C ++ H +   YHY   N+  HHH  H  H+    +  + N    + YHH     H+
Sbjct: 12  HSHCHHNLH-HQKHYHYHHHNNHYHHH--HHHHSFCHHHHHHHNHHHHHHYHHSHRHHHH 68

Query: 35  NH 30
           +H
Sbjct: 69  HH 70


>UniRef50_A4VDR7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 233

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
 Frame = -3

Query: 257 LHFDMFFCKIHLLCHDWCCNSFHR---------YYNEYHYCMMNSLRHHHGLHXFHNCLD 105
           +HFD +FC  H   H    +  H+         +Y  + Y + N L HH+ L  +H  L 
Sbjct: 80  IHFDYYFCLKHQNHHTQIPHRHHQNLSFRFSFYFYRFFFYYLQNHLLHHNHLLQYHLIL- 138

Query: 104 CYCLYKNLCIRYLYHH 57
              L + + + Y  HH
Sbjct: 139 --LLLQRINLHYRTHH 152


>UniRef50_A5DYD8 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 156

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 215 HDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIR-YLYHHCSSLVH 39
           H +CC  ++ YY  Y YC  + L      H + +  D +  ++ L +R Y YHH    +H
Sbjct: 93  HCYCCGYYYYYYYYYCYC-FDWLFLQQVPHVYFHSSD-FANHQYLSLRHYHYHHHHHQLH 150

Query: 38  NNH 30
           + H
Sbjct: 151 HYH 153


>UniRef50_Q5DAV3 Cluster: Putative uncharacterized protein; n=1;
           Schistosoma japonicum|Rep: Putative uncharacterized
           protein - Schistosoma japonicum (Blood fluke)
          Length = 230

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 164 CMMNSLRHHHGLHXFHNCLDCYC--LYKNLCIRYLYHHC-SSLVHNNH 30
           C+   L HHH  H   +   C+C   Y +LC R  +HHC   L +++H
Sbjct: 16  CLRYHLCHHHSYHHLLSRYPCHCHHPYHHLCRR--HHHCHPCLPYHDH 61


>UniRef50_UPI0000D9D22B Cluster: PREDICTED: hypothetical protein;
           n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
           - Macaca mulatta
          Length = 229

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 218 CHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYC 96
           CH    +  H ++  +H+   +  R HH  H FHN  + +C
Sbjct: 188 CHSHHHSHHHSHHRSHHHSHHSHHRSHHSHHNFHNHSNPWC 228


>UniRef50_Q1LBS1 Cluster: Rieske (2Fe-2S) region; n=1; Ralstonia
           metallidurans CH34|Rep: Rieske (2Fe-2S) region -
           Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM
           2839)
          Length = 347

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -1

Query: 478 KYTHGIQLLADNLLSFAIHLGFI 410
           +Y  G+QL+ DNLL F+ HLGF+
Sbjct: 142 RYASGVQLIVDNLLDFS-HLGFV 163


>UniRef50_Q057X0 Cluster: NADH-quinone oxidoreductase; n=1; Buchnera
           aphidicola str. Cc (Cinara cedri)|Rep: NADH-quinone
           oxidoreductase - Buchnera aphidicola subsp. Cinara cedri
          Length = 912

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 550 FKLQWLSPLMLHDRTLFLTCFQCFKY 473
           FK Q+L PL+ H+    +TC++C +Y
Sbjct: 135 FKNQYLGPLISHNMNRCITCYRCIRY 160


>UniRef50_Q8IIL3 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 2480

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 191  GRSYNTSRDRVDESYKKTYRNEALLTIQTESMEVEEDHQKEKE 319
            G +YN  RD+V   Y K  +      I+ E +E +E+ QK+K+
Sbjct: 942  GNTYNQERDKVTNPYLKQKQKIDTYMIKDECIEKQEEDQKKKK 984


>UniRef50_UPI0000DBF85A Cluster: UPI0000DBF85A related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DBF85A UniRef100 entry -
           Rattus norvegicus
          Length = 126

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -3

Query: 227 HLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSS 48
           H L H +  + +H  ++ YH+   +   HHH  H +H+      L   L + + YHH   
Sbjct: 64  HHLHHHY--HHYHHLHHHYHHYHHHHHLHHHLHHHYHHLHHHLHL---LLLHHHYHHHHH 118

Query: 47  LVHNNH 30
             H++H
Sbjct: 119 HYHHHH 124


>UniRef50_Q380W9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 232

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -3

Query: 254 HFDMFFCKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCI 75
           ++++  C I  L +++  + ++ YY  Y+   + +       H ++  + CYC Y N+ I
Sbjct: 70  YYNIRICTITTLSYNYYYHYYYYYYCSYYNIRIYTPTTLFYYHYYYYYVHCYCSYYNIRI 129

Query: 74  --------RYLYHH 57
                    Y YHH
Sbjct: 130 YTLTTLSYHYYYHH 143


>UniRef50_Q5A7T4 Cluster: Putative uncharacterized protein; n=2;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 153

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 188 RYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNHD 27
           R Y   H+ + N      G+H  H+ LDC+ L  N C +Y +       H +H+
Sbjct: 90  RQYQYQHHNLTNHNPRLCGIHYIHHLLDCH-LVNNNCKQYTHQPNQRNCHYHHN 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,903,417
Number of Sequences: 1657284
Number of extensions: 6915257
Number of successful extensions: 19678
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19447
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)