Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20629
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.1  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    26   3.4  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   5.9  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   7.8  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 116 NCLDCYC-LYKNLCIRYLYHHCSSLVHNN 33
           N L C+  L  N CI Y Y  CSSL   N
Sbjct: 718 NFLRCFASLLHNCCIFYAYRACSSLFGEN 746


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 128 HXFHNCLDCYCLYKNLCIRYLYHHCSSL 45
           H  H C+       +L ++  Y HCS+L
Sbjct: 4   HYIHQCVKASSCKHSLSVKQRYFHCSAL 31


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 167 YCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRY 69
           + M+N + H++G H    C+      K LC+ +
Sbjct: 112 FSMLNFMIHYNGYHIMRRCIPDEHPAKRLCLSW 144


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 137 HGLHXFHNCLDCYCLYKNLCIRYLYHHC 54
           H  H +      +C   + C+ YL HHC
Sbjct: 185 HTCHLYRPPRASHCHLCDNCVEYLDHHC 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,389
Number of Sequences: 5004
Number of extensions: 32131
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)