Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20629
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744...    28   4.6  
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897...    27   8.0  

>05_04_0209 -
           19073147-19074041,19074117-19074163,19074258-19074437,
           19074839-19074955,19075105-19075227,19075391-19075776,
           19076177-19076303,19077140-19077202,19078035-19078086,
           19078189-19080023
          Length = 1274

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 164 NNDTRYNSGGRSYNTSRDRVDESYKKTYRNEALLTIQTESMEVEEDHQKEKE 319
           NND   N G  S +   D V       Y  E     + E  E EE+ ++E++
Sbjct: 685 NNDAHANEGPASVDNDADSVQSYLANKYTAEQEEEEEEEEEEEEEEEEEEED 736


>01_06_0541 -
           30088910-30089107,30089421-30089477,30089563-30089721,
           30090639-30090777,30090863-30091247,30091612-30091816
          Length = 380

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 167 NDTRYNSGGRSYNTSRDRVDESYKKTYRNEALLTIQTESMEVEE 298
           N  R++  GR Y   RD        T  +EAL     E+++VEE
Sbjct: 164 NYERHSGTGRGYEMKRDGAGRGNWGTATDEALAQETEEALKVEE 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,727
Number of Sequences: 37544
Number of extensions: 189733
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)