Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20629
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 36 0.018
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 30 1.2
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 30 1.2
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 29 2.7
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07) 29 3.5
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 3.5
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1) 28 6.2
SB_40677| Best HMM Match : DUF855 (HMM E-Value=2.6) 28 6.2
SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6) 27 8.2
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 215 HDWCCNSFHRY--YNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHHC 54
H +CC HRY Y +HYC RHH +H CY Y + C Y +H+C
Sbjct: 20 HHYCCYCHHRYCYYRHHHYCWY---RHH-----YH--YPCYRHYYHRC--YRHHYC 63
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 197 SYNTSRDRVDESYKKTYRNEALLTIQTESMEVEEDHQKEKE 319
SYN + ++ESYK+ + E E E+E+++ EKE
Sbjct: 315 SYNREKQELEESYKQKIK-ELQKNFAKEKQEIEDEYAHEKE 354
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 218 CHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHN 114
C+ N HRY++ +H+ + HHH H H+
Sbjct: 34 CYHKLKNPRHRYHHHHHHQHNHHQHHHHHNHHHHH 68
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Frame = -3
Query: 197 SFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDC-------YCLYKNLCI-RYLYHH 57
S HR Y YC H + +H L C +C Y+ C+ RY Y+H
Sbjct: 32 SCHRVCRRYRYCKSFLFIKHKCHYKYHCYLKCSCKVKYYHCRYRRRCVWRYKYYH 86
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -3
Query: 227 HLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNC 111
HL CH + HR HY HHH H+C
Sbjct: 368 HLYCHRPRLSYHHRPSRHLHYHRFRLSIHHHPSSRHHHC 406
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -3
Query: 227 HLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGL--HXFHNCLDCYCLYKNLCIRYLYHHC 54
H CH ++ HR H C L +HH L H N L ++ + R+ HHC
Sbjct: 248 HHHCHRPRLSNHHRPSRHLH-CHCPRLSNHHRLSRHLHSNRLRL-SIHHHPSSRH--HHC 303
Query: 53 SSLVHNNHDLGTXYLKV 3
L +NH + YL V
Sbjct: 304 HRLRLSNHHRPSRYLHV 320
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Frame = -3
Query: 227 HLLCHDWCCNSFHRYYNEYHYCMMNSLRHHH----GLHXF------HNCLDCYCLYKNLC 78
HL CH ++ HR + +H+C L +HH LH H+ L + L+ N
Sbjct: 231 HLHCHRPRLSNHHR-PSRHHHCHRPRLSNHHRPSRHLHCHCPRLSNHHRLSRH-LHSNRL 288
Query: 77 IRYLYHHCSSLVHNNHDL 24
++HH SS H+ H L
Sbjct: 289 RLSIHHHPSSRHHHCHRL 306
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -1
Query: 478 KYTHGIQLLADNLLSFAIHLGFILQLANRLLK 383
KY HG LLA + FAIH +LQ+ + LLK
Sbjct: 1545 KY-HGHLLLAHIIAKFAIHKRIVLQVFHSLLK 1575
>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
Length = 483
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 107 DCYCLYKNLCIRYL-YHHCSSLV 42
DC KNLC++YL HC+ LV
Sbjct: 216 DCIHTLKNLCLKYLNVSHCTKLV 238
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 218 CHDWCCNSFHRY-YNEYHYCMMNSLRHHHGLHXFHN 114
C+ N HRY ++ +H+ N +HHH H H+
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHHHHHH 281
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -3
Query: 191 HRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSSLVHN 36
H ++ + + + RHHH H +N Y N+ I+ + HH ++ N
Sbjct: 323 HHHHQRHRHRHRHRHRHHHHHHHEYNRRHRYFTDINITIQIIRHHFIIIIIN 374
>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = -3
Query: 200 NSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSSL 45
+ +HR+ + ++N + HH H + + + + + I + YHH S+
Sbjct: 450 HQYHRHPSISSLSIINIIIIHHQYHHYPSSISSLSIINIIIIHHQYHHHPSI 501
>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
Length = 284
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -3
Query: 188 RYYNEYHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNHDLGTXY 12
+Y + Y Y + +LR + LH H C Y+ I Y YH +L H H L T +
Sbjct: 99 KYPSHYTYRIPYTLRIPNTLHTTHTAYRTQCTYR---IPYRYHIRYTL-HVRHTLRTTH 153
>SB_40677| Best HMM Match : DUF855 (HMM E-Value=2.6)
Length = 153
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -3
Query: 230 IHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLDCY 99
I LL N + +++ M N +H H H +CL C+
Sbjct: 59 IELLLITEVSNKHYVLIKDFNKFMFNQTKHEHKKHFCMSCLQCF 102
>SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)
Length = 388
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 227 HLLCHDWC-CNSFHRYYNEYHYCMMNSLRHHHGLHXFHNCLD 105
H++ H+WC C + + + +C H H + C +
Sbjct: 264 HMIHHEWCTCTEYSEHMVHHVWCTCTEYSEHMVHHVWCTCTE 305
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 191 GRSYNTSRDRVDESYKKTYRNEALLTIQTESMEVEEDH-QKEKE 319
G +Y +R +E +K Y EA E E EE+ +KE+E
Sbjct: 3 GANYENDNERRNEMEEKAYEQEAANREDNEQDEEEEEEVEKEEE 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,989
Number of Sequences: 59808
Number of extensions: 229349
Number of successful extensions: 660
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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