Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20629
         (571 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   1.7  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   4.0  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   9.3  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 277  REYGGRGGSPERKRMRMEVNFSK 345
            +EY   GGS   +  R+E+++SK
Sbjct: 963  QEYAADGGSAYERESRIEIDYSK 985


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 68  LYHHCSSLVHNNHDLG 21
           L HH SS  H+NH LG
Sbjct: 93  LLHHPSSSPHSNHLLG 108


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 224 DESYKKTYRNEALLTIQTESMEVE 295
           DES ++TY +  +    TES+E+E
Sbjct: 566 DESKEQTYGDPKIEDNPTESVEIE 589


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,188
Number of Sequences: 2352
Number of extensions: 7885
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53824896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)