Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20629
         (571 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011361-1|AAR96153.1|  484|Drosophila melanogaster RE66690p pro...    29   4.4  
AE014297-2064|AAF55213.2|  636|Drosophila melanogaster CG33207-P...    29   5.8  
AB081475-1|BAC06341.1|  636|Drosophila melanogaster transmembran...    29   5.8  

>BT011361-1|AAR96153.1|  484|Drosophila melanogaster RE66690p
           protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 173 YHYCMMNSLRHHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNH 30
           +H+C  N  RHHH  H        +C Y++   R L H   S  H  H
Sbjct: 71  HHHCHCNHHRHHHHHH--------HCHYRSTKRRALLHQKRSHHHQKH 110


>AE014297-2064|AAF55213.2|  636|Drosophila melanogaster CG33207-PB,
           isoform B protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 143 HHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNH 30
           HHH  H  +   D +  +    + + +HH   L H++H
Sbjct: 146 HHHHHHGMYEDPDAHLGHHRPLVMHRHHHHQQLAHHHH 183


>AB081475-1|BAC06341.1|  636|Drosophila melanogaster transmembrane
           protein Pxb protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 143 HHHGLHXFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNH 30
           HHH  H  +   D +  +    + + +HH   L H++H
Sbjct: 146 HHHHHHGMYEDPDAHLGHHRPLVMHRHHHHQQLAHHHH 183


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,516,657
Number of Sequences: 53049
Number of extensions: 341666
Number of successful extensions: 1015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)