Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20629
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-2|CAB02852.1|  526|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    28   4.1  
U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fb...    28   5.4  
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z81050-2|CAB02852.1|  526|Caenorhabditis elegans Hypothetical
           protein C50B6.3 protein.
          Length = 526

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 182 NSGGRSYNTSRDRVDESYKKTYRNEALLTIQTESMEVEEDHQKE 313
           N G R   + +  V + YK T+R       +TES +VEE+ +K+
Sbjct: 460 NEGPRILTSDQKLVMQQYKTTFRQGPTFAEETES-DVEEEEEKK 502


>Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical
           protein T07C12.9 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 251 FDMFFCKIHLLCHDWCCNSFHRYYN 177
           +  F   + + C ++CCN+   YYN
Sbjct: 180 YGQFDAVVTIFCVEYCCNTLSEYYN 204


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 268 YSNREYGGRGGSPERKRMRMEVNF 339
           Y  R    R G+P+RK M++EVN+
Sbjct: 306 YECRANNSRTGNPKRKAMKLEVNY 329


>U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 8 protein.
          Length = 535

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 131 LHXFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNH 30
           LH F     CYC  +N+ I     H  S ++NN+
Sbjct: 81  LHMFGTPPSCYCAQENIPISSNVGHVLSTINNNY 114


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
 Frame = -2

Query: 495 HAFSVSNILMEYSCWLIIY*VLQFI---------WASYC 406
           H   V +I  EY+ W+++Y ++ FI         WA YC
Sbjct: 38  HGSLVKSIWKEYAIWIVLYHLILFIYRVVMPIFGWADYC 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,711,943
Number of Sequences: 27780
Number of extensions: 183683
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)