Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20629
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    31   0.54 
At4g18335.1 68417.m02720 hypothetical protein                          29   2.2  
At1g69560.1 68414.m07999 myb family transcription factor (MYB105...    27   6.7  

>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 251 FDMFFCKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHXF 120
           FD F C+ H+        S   Y+N ++YC    +  HHG H F
Sbjct: 134 FDCFSCRKHM--------SPLTYHNYHYYCKTCDMEFHHGCHTF 169


>At4g18335.1 68417.m02720 hypothetical protein
          Length = 164

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 188 RYYNEYHYCMMNSLRHHHGLH 126
           RY ++Y+Y   ++LRH  GLH
Sbjct: 83  RYNHQYYYYYRHTLRHRRGLH 103


>At1g69560.1 68414.m07999 myb family transcription factor (MYB105)
           contains Pfam profile: PF00249: Myb-like DNA-binding
           domain
          Length = 330

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 200 NSFHRYYNEYHYCMMNSLRHH 138
           +S H +YN+  +C+M+  +HH
Sbjct: 23  SSSHHHYNQQQHCIMSEDQHH 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,988,358
Number of Sequences: 28952
Number of extensions: 162939
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)