Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20628
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   2.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.7  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   6.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.5  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 278  TTLKKYTTRPNTTDKTV*VHMPTDTRLP 361
            TT +  TTRP TT  T     PT T  P
Sbjct: 1056 TTRRTTTTRPTTTSTTT---RPTTTNWP 1080



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 257  RKSRILRTTLKKYTTRPNTTD 319
            R++   R T    TTRP TT+
Sbjct: 1058 RRTTTTRPTTTSTTTRPTTTN 1078


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 324 VLSVVLGRVVYFFNVVLSILDFLSFFQ 244
           V+SV++  + YFFN    +     FFQ
Sbjct: 57  VVSVLMDFIAYFFNFWTILFSRSDFFQ 83


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 51  LCLRRRNPASMFSKLTSSPKKHRS 122
           +C R RN + +      SP+ +RS
Sbjct: 403 VCFRPRNNSILIKNFNDSPESNRS 426


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 89  GKHRCRVSATQTQLRPRREQTQ 24
           GK++ R     T++RP+R+ ++
Sbjct: 240 GKNQQRTGTELTKMRPKRQSSR 261


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 545 VQPHIWSLFYLFRSTLGKLSSWWKPSRSDQ*RTLTRSFLPSL 420
           +QP+   L++ +   +    S W P   D   TL  +++P L
Sbjct: 467 IQPYDSLLWHTWMPVMRICVSAWNPKDCDPLITLIETWMPLL 508


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 346 GYQTPESAKVENRVRSGDVTGS 411
           GY TPES   E   R+ D+T S
Sbjct: 44  GYHTPESLHYEG--RAVDITTS 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,243
Number of Sequences: 336
Number of extensions: 2999
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)