Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20628
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   1.7  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.3  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.3  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    27   3.0  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   3.0  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    27   3.0  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   4.0  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    26   5.2  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   6.9  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   9.1  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   9.1  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    25   9.1  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.1  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   9.1  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 124 VLLCFFGLDVNLENIDAGFRRRRHNCDHGENRHNT 20
           +L+ F GL VNL  I A      HN DHG + H++
Sbjct: 454 LLVSFLGLVVNLVGILAF--NHGHNHDHGSHHHHS 486


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 48  QLCLRRRNPASMFSKLTSSPKKHRS 122
           QL LRR+  A+  SKL+SS   H S
Sbjct: 741 QLLLRRKQGATCLSKLSSSSSSHTS 765


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +1

Query: 241 LLEERKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVTGSYIY 420
           +++E K +     Y +  Y+ ++   +D   +    Y    + K+ NR++ GDV+ + I 
Sbjct: 339 MVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVSLAQIS 397

Query: 421 KDGKNDLVKVRYWSD 465
             G  DL K+ +  D
Sbjct: 398 SGG--DLKKINHVLD 410


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +1

Query: 433 NDLVKVRYWSDRD-----GFHQEDNLPKVERNK 516
           +DL K  YWSD+D     G  + D +P V++N+
Sbjct: 45  HDLGKKGYWSDQDILSLYGLFENDEVPFVKKNE 77


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 266 RILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS 403
           R++  + +K++  P T DKT    +P D +  N+    I+S P TS
Sbjct: 21  RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 220 SRPHSWTLLEERKEIENTEDYVEEVYD-ASQYHGQDGLGAYAYGYQTPESAK 372
           S PHSW+  E R+ I++ +  V ++ D  S    Q+ L +  +G  T E AK
Sbjct: 652 SEPHSWSNAELREAIKDVQ--VGDMSDFISDLLKQNFLESLVHGNYTEEDAK 701


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 250 ERKEIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 372
           E  E+  +ED V  V    + + ++ L  G YAYGY+TP + +
Sbjct: 7   ENVELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 77  IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 181
           ID+  +D  P   E AQKY+ + PFT P  A     LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 359 PNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTYLRSSETSRRGSRCE 538
           P   + KI S    +  + + R AK+ +S+YV G+T         +LR + + RR S  E
Sbjct: 354 PENSKVKIYSSSIANSEKTALRLAKL-ASKYVQGKTQFGVEDNEDFLRVAGSWRRASTIE 412

Query: 539 AARIASRKS 565
               +S  S
Sbjct: 413 KGVSSSELS 421


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -1

Query: 357 SLVSVGI-CT*TVLSVVLGRVVYFFNVVLSILDFLSFFQ*CPRVGPASTVRNLGSLYLIN 181
           S  +VGI  T   L +  G+     NV LS+L + +     PRVGP+   R      +  
Sbjct: 4   SCFNVGIWATGLALLMNQGQSPLLSNVGLSVLAYKATAMFIPRVGPSFIKRGFSGKDMNK 63

Query: 180 GKTAVRPAN*GSVNGGLFKYFC 115
            +  V P   G+V+  L  + C
Sbjct: 64  VEKYVIPETMGAVS-ALVYFMC 84


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 101 EPEEAQKYLNSPPFTDPQLAGRTAVLPLI--KYNDP 202
           E E+   YL+S P T P+L   +AV   I  +Y DP
Sbjct: 180 ENEDLAIYLDSSPVTQPELDQSSAVEESISTRYLDP 215


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 341 PTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVT 457
           P  + LP+   S I+ D ETS A + + +    +S  VT
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVT 311


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 265 ENTEDYVEEVYDASQYHGQDGLGAYAYG 348
           ++TEDYV ++Y+AS    +     +AYG
Sbjct: 175 QSTEDYVYDIYEASS--KEPNKPTFAYG 200


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = +1

Query: 106 RRSTEVLKQPTIHRSSISWPHRCLTID*IQRPEVSYSRSRPHSWTLLEERKEIENTEDYV 285
           +  TE  K    H+SS+  P    +   +++P+ +  R R  S+ LL + KE+  TE+ +
Sbjct: 33  KNKTEENKTIDKHKSSVG-PKEPKSS--LEKPKAN--RKRKQSYGLLHDIKELGGTEEDL 87

Query: 286 EEVYD 300
           E + D
Sbjct: 88  ELIED 92


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +2

Query: 371 RSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTYLRSSETSRRGSRCEAARI 550
           ++K   +   S     +  A++ISS  +TG     ST     + +  ++ R +  EA+R 
Sbjct: 143 KNKHGKNSSKSSRAAQSAAAELISSSSITGARPANSTSVPNAVNTEISAARATESEASRN 202

Query: 551 ASRKS 565
            ++ S
Sbjct: 203 QTKAS 207


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 77  IDVFQIDIEPEEAQKYLNSPPF 142
           +D F +++ P+EA KYL S  F
Sbjct: 599 VDEFGVELGPKEAYKYLLSHQF 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,335
Number of Sequences: 5004
Number of extensions: 50969
Number of successful extensions: 161
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)