Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20628
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    29   2.3  
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505...    29   3.1  
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724...    29   3.1  
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    28   5.4  
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340...    28   7.1  
02_02_0569 + 11580768-11580900,11581003-11581088,11582270-11582377     27   9.4  
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375...    27   9.4  

>02_01_0137 +
           988442-988641,989088-989281,989369-989488,989594-989673,
           990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 382 RVRSGDVTGSYIYKDGKNDLVKVRYWSDRDGFH 480
           +V  GD TG+ +   G NDL+ +R+  D +  H
Sbjct: 851 QVLDGDSTGNLVVPIGMNDLINLRHLIDHEEVH 883


>07_01_0675 +
           5055842-5055950,5056036-5056193,5056276-5057067,
           5057544-5057760,5058280-5058449,5058986-5059630
          Length = 696

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 373 VENRVRSGDVTGSYIYKDGKNDLVKVRY 456
           V N V S  +TG Y+Y+ G +  +  RY
Sbjct: 537 VNNNVGSASITGGYVYRSGTDPCLAGRY 564


>06_03_0500 +
           21470681-21470952,21471049-21471089,21472322-21472485,
           21472577-21472679,21472806-21472975,21473766-21474239
          Length = 407

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 247 EERKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVTG 408
           EE +E+E  E+ VEE  +  +   ++G  A A      E    E R   G+V G
Sbjct: 19  EEEEEVEEVEEEVEE--EEEEEEEEEGADATAAAADAAEEVAEERRGGGGEVEG 70


>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 80  DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 226
           D   I I    A    NS PFT   +P+ +    V+PL KYN   +  V  G
Sbjct: 243 DSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLG 294


>09_02_0042 -
           3402424-3402534,3403242-3403345,3403448-3403562,
           3404344-3404391,3404519-3404608,3404819-3404893,
           3405001-3405153,3405695-3405779,3408051-3408121,
           3408243-3408293,3409037-3409453,3409529-3409660,
           3409779-3409892,3411113-3411179,3411264-3411397,
           3411486-3411701,3412627-3413418
          Length = 924

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +2

Query: 317 DKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY 496
           +K   V+    TR+  + ++    DP T P     R       R +  QTV  S    TY
Sbjct: 653 EKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTY 712

Query: 497 LRSSETSRR 523
           + + E  +R
Sbjct: 713 VGAREQIKR 721


>02_02_0569 + 11580768-11580900,11581003-11581088,11582270-11582377
          Length = 108

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 265 RFPFVLPVVSKSGACFDCTKPRVVVFN 185
           R+ +V+   SK+  CF C KP + +FN
Sbjct: 67  RWHYVMTHHSKNKKCFVCNKPTLGIFN 93


>01_07_0288 + 42534552-42534558,42535302-42537280,42537367-42537513,
            42537982-42538526,42538906-42538981,42539357-42539437
          Length = 944

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
 Frame = +1

Query: 136  TIHRSSISWPHRCLTID*IQRPEVS---YSRSRPHSWTLLEERKEIENTEDY-VEEVYDA 303
            ++H + IS  H+ L     +  EVS   +  S PH   L   R  I + E +      D 
Sbjct: 774  SLHANGISSQHKSLG-SISEHSEVSTHSHRVSSPHDTELSNRRARISSDELFSASGKSDD 832

Query: 304  SQYHGQDGLGAYAYGYQTPESAKVE-NRVRSGDVT----GSYI----YKDGKNDLVKVRY 456
            S       L     GY+   +  +  N+V++  +     G YI     +DG  DL +VR+
Sbjct: 833  SNNRDARSLQNGEDGYKPRGTVSLSSNQVQAEWIEQYEPGVYITLTTLRDGTRDLKRVRF 892

Query: 457  WSDRDGFHQEDNLPKVERNK 516
               R G HQ +N     R K
Sbjct: 893  SRRRFGEHQAENWWNENREK 912


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,663,170
Number of Sequences: 37544
Number of extensions: 357140
Number of successful extensions: 1024
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)