Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20628
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11) 31 0.59
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 30 1.4
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_22341| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 30 1.8
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 30 1.8
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24) 28 5.5
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 28 5.5
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 5.5
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 5.5
SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0) 28 7.3
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 28 7.3
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_45384| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 27 9.7
SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8) 27 9.7
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1) 27 9.7
>SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)
Length = 652
Score = 31.5 bits (68), Expect = 0.59
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 341 PTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTYLRSSETSR 520
P+ + +RRSK + ETSP + R K S V +T T T S T +
Sbjct: 517 PSGQQTSVVRRSKRQAMKETSPDYVFRRNIKRNKSTAVASSDMTGVTNTTMTSAVSSTGK 576
Query: 521 RGSRCEAARI 550
GS A ++
Sbjct: 577 AGSTSSAKQV 586
>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 398 TSPARISTRTAKMISSRYVTGQTVTVSTRKTTYLR-SSETSRRGSRCEAARIASRKS 565
T P+R ST +++ +T+T ST TT R SS S RG + +RKS
Sbjct: 176 TPPSRTSTPRSRLTPRSRSRSRTITPSTPSTTSSRASSRGSARGGAKTTKKCTTRKS 232
>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 271 TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENR 384
TE + + S YHGQDGLG A G + P+ ++++
Sbjct: 151 TEGLTGDFVELSAYHGQDGLGD-AQGLREPDRTPLKDK 187
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 341 PTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVT 472
PT T L+ ++ +S P TSPA T T + + +T TVT
Sbjct: 773 PTATTTSTLQTTEPSSTPSTSPALTVTMTTVIATDSSITPTTVT 816
>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 302 RPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISS 445
RP+ T T H P D R P + D +TS R S+ + + S
Sbjct: 544 RPSQTPPTSLKHFPGDERTPPTSLKHVPGDEQTSQVRFSSEPSSTLRS 591
>SB_22341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Frame = +1
Query: 208 SYSRSRPHSWTLLEERKEIENTEDYVEEVYDASQYHG-------QDGLGAYAYGYQTPES 366
SY RPH+ L E+E Y ++ +A + HG DGL + A Y +S
Sbjct: 267 SYGEFRPHNEFLNTALVEMEGNALYRADLVEAIRLHGGGEEELNGDGLASLAQAYIRKQS 326
Query: 367 AKVENRVRSGDVTGSYIYKDGK 432
K + D + ++ + K
Sbjct: 327 TKANPPEETDDESRQFVQRQSK 348
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 29.9 bits (64), Expect = 1.8
Identities = 27/106 (25%), Positives = 46/106 (43%)
Frame = +2
Query: 248 KNERKSRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRT 427
+ R R T T R DK T P +++ + +TS + +
Sbjct: 177 RQARPREASRKTKTSKTKRSKPQDKQAERQASRKTSKPKDKQAARQASRKTSKPQ-EKQA 235
Query: 428 AKMISSRYVTGQTVTVSTRKTTYLRSSETSRRGSRCEAARIASRKS 565
A+ SS+ T + T ++RKT + E +++ +AAR ASRK+
Sbjct: 236 ARQASSKTKTSRK-TKTSRKTKTSKPQEKNKQEQDKQAARQASRKT 280
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 332 VH-MPTDTRLPNLRRSKIAS-DPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTYLRS 505
VH +P+ +R P+L + ++ P T+ I R+ + SR GQ T+ST KTT +
Sbjct: 1701 VHSIPSPSR-PSLNIAPSSTLTPSTAGHTIDIRSTNRVHSRAQEGQIPTLSTLKTTSTST 1759
Query: 506 SET 514
S T
Sbjct: 1760 STT 1762
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/72 (31%), Positives = 28/72 (38%)
Frame = +2
Query: 278 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVT 457
T + K T P TT P T LP KI + PET+ +T + S T
Sbjct: 2896 TAVPKTTAAPETTPLPKTTAAPETTTLP-----KITAAPETTAVPKTTAAPETTSVPKTT 2950
Query: 458 GQTVTVSTRKTT 493
T S KTT
Sbjct: 2951 AAPETTSVPKTT 2962
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Frame = +2
Query: 278 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRS-------KIASDPETSPARISTRTAKM 436
TTL K T P TT P T +P + K + PET+P +T +
Sbjct: 2860 TTLPKTTAAPETTSVPKTTAAPGTTSVPKTTAAPETTAVPKTTAAPETTPLPKTTAAPET 2919
Query: 437 ISSRYVTGQTVTVSTRKTT 493
+ +T T + KTT
Sbjct: 2920 TTLPKITAAPETTAVPKTT 2938
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 446 LTRSFLPSL*IYEPVTSPDLTRFSTF----ADSGVWYP*AYAPRPSCPWYWD 303
L R+FLP +Y + +PDLT+ T D + Y + C WYWD
Sbjct: 1550 LRRTFLPYQGLYYVLITPDLTKQQTLLWRSGDLNISYGLGFY-ESGC-WYWD 1599
>SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24)
Length = 563
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 284 LKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTA 430
L +TT P+++ H+ T T PN RSK +++P+R STR +
Sbjct: 437 LASFTTMPHSSAS---FHI-TSTPFPNGYRSKTRCGAQSAPSRCSTRVS 481
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 TTLKKYTTRPNTTDKTV*VHMP-TDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYV 454
T + T P TTD P T T L +K PET+PA +T + ++
Sbjct: 217 TAAPETTVAPETTDAPATTLAPKTTTALETTVEAKTTVVPETTPALETTSAPESTAATES 276
Query: 455 TGQTVTVSTRKTT 493
T T +++TT
Sbjct: 277 TVAPETTVSQETT 289
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 TTLKKYTTRPNTTDKTV*VHMP-TDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYV 454
T + T P TTD P T T L +K PET+PA +T + ++
Sbjct: 2279 TAAPETTVAPETTDAPATTLAPKTTTALETTVEAKTTVVPETTPALETTSAPESTAATES 2338
Query: 455 TGQTVTVSTRKTT 493
T T +++TT
Sbjct: 2339 TVAPETTVSQETT 2351
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +2
Query: 341 PTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTYLRSSETS 517
P+ T P S I PETSPA IS T K TG+ +T TT L S ++
Sbjct: 3102 PSTTISPKTETS-ITETPETSPATISISTEK-------TGKAITTPQGTTTELPPSPST 3152
>SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0)
Length = 210
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 178 TID*IQRPEVSYSRSRPHSWTLLEERKE 261
T + QRP + Y SRPH W L+ + KE
Sbjct: 147 TFNGFQRPTLYYVMSRPH-WQLMHDIKE 173
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 281 TLKKYTTRPNTTDK--TV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYV 454
T ++ TT+P TT + T+ ++T+ P +R++ A+ T PA T K ++
Sbjct: 1420 TREEATTKPTTTTRKTTIPTTTASETKPPTIRKTTTAT--TTVPATKPPTTRKTTTATTT 1477
Query: 455 TGQTVTVSTRKTT 493
G+T TRK T
Sbjct: 1478 QGRT----TRKPT 1486
>SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 350 TRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTYLRSSETSRRGS 529
TR+ LRRS A + +R S+ ++ R ++ V VS +T +E R
Sbjct: 497 TRMQELRRSSSARSARRASSRASSAKSQRRLERAMSAGAVRVSRPRTAQSDRAEEPREEP 556
Query: 530 RCE 538
R E
Sbjct: 557 RLE 559
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +2
Query: 278 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS-PARISTRTAKMISSRYV 454
TT+ YTT T+ T V + + + T+ +T I++ Y
Sbjct: 386 TTITNYTTTTTITNYTTTVSTTITNYTTTITINNYTTTVNTTITTNYTTIVTITITTNYT 445
Query: 455 TGQTVTVSTRKTTYLRSSETS 517
T T+T+ST TT + + T+
Sbjct: 446 TIVTITISTNYTTIVTITITT 466
Score = 27.9 bits (59), Expect = 7.3
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 281 TLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTG 460
T+ YTT NTT T + T T N + + T+ I T T I++ Y T
Sbjct: 416 TINNYTTTVNTTITTNYTTIVTITITTNYT-TIVTITISTNYTTIVTIT---ITTNYTTI 471
Query: 461 QTVTVSTRKTTYLRSSETS 517
T+T++T TT + ++ T+
Sbjct: 472 VTITITTNYTTTVTTTITT 490
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.5 bits (58), Expect = 9.7
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +2
Query: 275 RTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARI--STRTAKMISSR 448
RT T+ P+T+ + T P + S P TS R +T T+ +S
Sbjct: 43 RTGSTTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTSAPSTST 102
Query: 449 YVTGQTVTVSTRKTTYLRSSET 514
TG T T S T+ +S T
Sbjct: 103 PRTGSTTTTSAPSTSTTSNSTT 124
>SB_45384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 121 VLKQPTIHRSS-ISWPHRCLTID*IQRPEVSYSRSRPHSWTLLEERKEIENTEDYVEEV 294
++ QP H +S + H C + Q+P S + R H E R E E T+ + E+
Sbjct: 18 IIPQPLYHITSPCKFSHLCWDVSVHQKPSQSQACERWHRDDSRENRIEPEETQSHSTEL 76
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +2
Query: 281 TLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTG 460
T+K YTT+P TT + P T+ P + + T P T K +++ T
Sbjct: 93 TIKLYTTKPKTTKPH--TNKPYTTK-PRTTKPRTTKPHTTKPCTTKPHTTKPPTTKPQTT 149
Query: 461 QTVTVSTRKT 490
+ T R T
Sbjct: 150 KPHTTKPRTT 159
>SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)
Length = 714
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 173 VLPLIKYND--PRFRTVEAGPTLGHYWKNERKSRILRTTLKKYTTRPNTTDKT 325
+L + + D P V A P GHY + + R T + PNTT KT
Sbjct: 308 ILCCLSFGDTSPSHEKVRAPPK-GHYLRGRADEPVARYTSTGSLSHPNTTTKT 359
>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 782
Score = 27.5 bits (58), Expect = 9.7
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Frame = +2
Query: 65 PKPGIDVFQIDI-EPEEAQKYLNSPP-----FTDPQLAGRTAVLPLIKYNDPRFRTVEAG 226
P +D + D+ E EE +K + S P F D + PL + D + E
Sbjct: 531 PHKPVDFTEGDVSELEEGEKQIPSQPTGVPVFEDVVASSEDKDEPLPDFEDVKEPEEEFQ 590
Query: 227 PTLGHYWKNERKSRILRT-TLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPE 397
+ + ++ + RT T K TTR T+D+ MPT+ L + K PE
Sbjct: 591 EFVDEEGRVVKRRIVRRTVTTKTLTTRTVTSDQAGPEEMPTEEVLESAEPVKGTEVPE 648
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,035,009
Number of Sequences: 59808
Number of extensions: 413877
Number of successful extensions: 1330
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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