Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20628
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 191 YNDPRFRTVEAGPTLGHYWKN 253
           YN  RFR +  G  + ++W N
Sbjct: 388 YNMVRFRNLVKGTKIDNWWDN 408



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/38 (21%), Positives = 17/38 (44%)
 Frame = +1

Query: 277 DYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVR 390
           DY  E     +Y+G   +  + Y Y+   + +  N ++
Sbjct: 247 DYGNEAISKREYNGIGAVIEFKYSYEISNAFRGNNNLK 284


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 581 SSFLPCFFVKQYVQPHIWSLFYLFRSTLGKL 489
           ++ + C+    Y+    W++FY F S   +L
Sbjct: 66  AAVMSCWMNVYYIVILAWAIFYFFMSMRSEL 96


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 349 IRRHMHLDRLVRGIG 305
           + RH H+ RLV  IG
Sbjct: 107 VERHKHIVRLVTAIG 121


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 68  SATQTQLRPRREQTQYVAC 12
           + TQ Q+R  ++ TQ ++C
Sbjct: 611 NCTQYQIRDHKDVTQCISC 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,359
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)