Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20628
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62780.1 68418.m07881 DNAJ heat shock N-terminal domain-conta...    29   3.4  
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    28   4.5  
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote...    28   6.0  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    28   6.0  
At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    27   7.9  
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    27   7.9  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    27   7.9  
At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplas...    27   7.9  
At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplas...    27   7.9  
At1g01730.1 68414.m00092 expressed protein                             27   7.9  

>At5g62780.1 68418.m07881 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam PF00226: DnaJ
           domain; similar to dnaJ (GI:144832) [Clostridium
           acetobutylicum]
          Length = 207

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 240 CPRVGPASTVRNLGSLYLINGKTAVR 163
           CP  G  S + N+ S  +ING+T +R
Sbjct: 104 CPNCGQNSAMTNISSTEVINGRTFIR 129


>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 317 DKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY 496
           +K   V+    TR+ ++ R     DPE  P  +  R       R +  QTV  S    TY
Sbjct: 740 EKPADVYSGIATRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTY 799

Query: 497 LRSSETSRR 523
           + + +  +R
Sbjct: 800 IGARDQIKR 808


>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 906

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 361 ESAKVENRVRSGDVTGSYIYKDGKNDLVKVRYWSDRDGFHQEDNLP 498
           ESA++++ +  G   G Y+   G N+L +  Y    D F  +DN P
Sbjct: 617 ESAEIKDNLAVGIPEGEYMDLSGTNELARCAY---NDVFTGQDNQP 659


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 80  DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 226
           D   I I    A    NS PFT   +P+ +    V+PL KYN   +  V  G
Sbjct: 242 DSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 293


>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 251 NERKSRILRTTLKKYTTRPNTTDKTV*VHMPTDT 352
           N RK  + RTT++ ++T+P     T+  H  T T
Sbjct: 298 NSRKPELKRTTMESHSTKPELRKGTMESHNTTAT 331


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 334 AYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLV--KVRYWSDRD 471
           +Y  G +T  +++V  ++  G+    Y++ DG+N ++   +  WS R+
Sbjct: 494 SYGVGGKTVITSRVYPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRN 541


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 39/146 (26%), Positives = 60/146 (41%)
 Frame = +2

Query: 83   VFQIDIEPEEAQKYLNSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNERK 262
            V ++ + PE  +  ++     D   AG++++L   K N P      AGP L  +      
Sbjct: 1028 VARMSLTPETCRLDVSQTSILDNVSAGKSSMLTEAKDNTPFSHCGTAGPELLLFAPPPPP 1087

Query: 263  SRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMIS 442
               +   L   TT      +T  V   T  RLP   +S +    E SP  +S+  +   S
Sbjct: 1088 PTAISHDLTLTTTALRLGSETT-VEAGTVERLP---KSVLGVSSEPSPRSLSSHDSS--S 1141

Query: 443  SRYVTGQTVTVSTRKTTYLRSSETSR 520
            +R  T ++  VS  K    RSS  SR
Sbjct: 1142 ARGSTERSPRVSQPK----RSSGHSR 1163


>At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplast
           (RPOPT) identical to SP|O24600 DNA-directed RNA
           polymerase, chloroplast precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 1035

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 317 DKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY 496
           +K   V+     R+  + +   + DPE++P     +       R +  QTV  S    TY
Sbjct: 722 EKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTY 781

Query: 497 LRSSETSRR 523
           + + E  +R
Sbjct: 782 VGAREQIKR 790


>At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplast
           (RPOPT) identical to SP|O24600 DNA-directed RNA
           polymerase, chloroplast precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 993

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 317 DKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY 496
           +K   V+     R+  + +   + DPE++P     +       R +  QTV  S    TY
Sbjct: 722 EKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTY 781

Query: 497 LRSSETSRR 523
           + + E  +R
Sbjct: 782 VGAREQIKR 790


>At1g01730.1 68414.m00092 expressed protein
          Length = 224

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 401 SPARISTRTAKMISSRYVTGQTVTVSTRKTTYLRSSETSRRGS 529
           SP R  T  +  +S+    G+  T +T  T+ LRSSET +  S
Sbjct: 130 SPKREKTAKSDSLSN----GKATTTTTTTTSVLRSSETEKHSS 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,147,486
Number of Sequences: 28952
Number of extensions: 278463
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)