Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20627
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 100 2e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 93 2e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 93 2e-19
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 74 1e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 73 1e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 72 4e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 4e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 62 4e-10
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 57 1e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 7e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 50 2e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 2e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 5e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 48 5e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 1e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 47 1e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 2e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 46 2e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 46 2e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 46 3e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 8e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 44 8e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 44 8e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 8e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 44 1e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 1e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 1e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 43 2e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 42 4e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 42 4e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 4e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 5e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.001
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 0.001
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.002
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 40 0.002
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 38 0.007
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.011
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.020
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.026
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.026
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 36 0.035
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.080
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.14
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.14
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 33 0.19
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.25
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 31 0.75
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 31 0.99
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 31 0.99
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 31 0.99
At2g25460.1 68415.m03049 expressed protein 30 1.3
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 30 1.7
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 29 4.0
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 4.0
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 29 4.0
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 29 4.0
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.3
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.3
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.3
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.0
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.0
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.0
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.2
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 27 9.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/88 (48%), Positives = 56/88 (63%)
Frame = +1
Query: 244 RLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 423
+L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
V + VK G+ EPTPIQ+QGWP+AM G+
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
Score = 89.8 bits (213), Expect = 2e-18
Identities = 41/61 (67%), Positives = 50/61 (81%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 704 T 706
T
Sbjct: 204 T 204
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 92.7 bits (220), Expect = 2e-19
Identities = 38/89 (42%), Positives = 59/89 (66%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 704 T 706
T
Sbjct: 270 T 270
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 92.7 bits (220), Expect = 2e-19
Identities = 38/89 (42%), Positives = 59/89 (66%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 704 T 706
T
Sbjct: 270 T 270
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/59 (55%), Positives = 40/59 (67%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 700
KTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIR 632
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K + Y++P PIQ Q PI MSG+
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 658
KTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K + Y++P PIQAQ PI MSG+
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 71.7 bits (168), Expect = 4e-13
Identities = 28/84 (33%), Positives = 48/84 (57%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K Y++PT IQ Q PI +SG+
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGR 266
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
KTGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 704 T 706
T
Sbjct: 262 T 262
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 704 T 706
T
Sbjct: 262 T 262
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 704 T 706
T
Sbjct: 262 T 262
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGK 507
+ G+ PTPIQAQ WPIA+ +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/61 (50%), Positives = 40/61 (65%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
KTGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 704 T 706
T
Sbjct: 539 T 539
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 685
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGL 348
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/58 (51%), Positives = 37/58 (63%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKI 330
Score = 34.7 bits (76), Expect = 0.061
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
V + G+ P+PIQAQ WPIAM +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 429
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ +K G PTPIQ QG P+ +SG+
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGR 135
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 679
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 679
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGK 507
PIQ QG P+ ++G+
Sbjct: 171 PIQVQGLPVILAGR 184
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFG 682
KTGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAG 215
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGK 507
G+
Sbjct: 150 DGR 152
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 685
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG++ PT +QAQ P+ +SG+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGR 68
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADF 679
R +TG GKTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 664
R +TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 655
+ KTG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
+TGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 689 SYVR 700
+ V+
Sbjct: 264 TGVK 267
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQAQGWPIAMSGK 507
+ Y +PTP+Q PI + G+
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 658
R KTGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 31.5 bits (68), Expect = 0.57
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 K 507
K
Sbjct: 84 K 84
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQ 664
R +TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 691
TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H +
Sbjct: 158 TGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA 216
Query: 692 YVRN 703
R+
Sbjct: 217 RFRS 220
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
+TGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 689 SYVR 700
+ V+
Sbjct: 251 TGVK 254
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
Y +PTP+Q PI +G+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 655
+ KTG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
+TGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 689 SYVR 700
+ V+
Sbjct: 256 TGVK 259
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
+TGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 689 SYVR 700
+ V+
Sbjct: 256 TGVK 259
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 688
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVST 116
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 5/54 (9%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQ 664
R KTG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 655
+ KTG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +1
Query: 340 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 210
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 316 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 490 IAMSGKI*LA 519
A++GK LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 73
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +2
Query: 524 KTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 700
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 658
+ KTG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
TGSGKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
+TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Score = 30.7 bits (66), Expect = 0.99
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG+ T IQA+ P M G+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGE 192
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 658
+ KTG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +2
Query: 494 LCLERFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
LC +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 688
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVST 116
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
R K G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + G+ G++ P+PIQ + PIA++G+ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
R K G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + G+ G++ P+PIQ + PIA++G+ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 664
+TGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ +
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAE 144
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 658
++GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
R K G+GKT A+ +P + I+ + + + A++L PTRELA Q QV +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
R K G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
R K G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.5 bits (78), Expect = 0.035
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
+TGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.3 bits (75), Expect = 0.080
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 530 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 617 ALVLAPTRELAQQIQQVAADFG 682
ALVLAPTRELAQQI++V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 617 ALVLAPTRELAQQIQQVAADFG 682
ALVLAPTRELAQQI++V G
Sbjct: 112 ALVLAPTRELAQQIEKVMRALG 133
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 617 ALVLAPTRELAQQIQQVAADFG 682
ALVLAPTRELAQQI++V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 664
+TGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 658
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PI+ F++ D V +GV GYK+P+ IQ + + G+
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 30.7 bits (66), Expect = 0.99
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
+ K+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 30.7 bits (66), Expect = 0.99
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
+ K+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 30.7 bits (66), Expect = 0.99
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 518 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
+ K+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 206 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 90
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREFFF 206
VGVK+I W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -3
Query: 247 IWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPITRH- 74
+W VL + F F K R ++S A R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 73 -DYFSDLVEDVYLNYGFFLTQGPP 5
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 657 ICCANSLVGAKTKAIGPSPLRI 592
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 277 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 277 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 87 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 233
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
Frame = +2
Query: 524 KTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 658
+TGSGKTLA+ LP + + + DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
Query: 659 QQ 664
+
Sbjct: 296 TE 297
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,106,551
Number of Sequences: 28952
Number of extensions: 326762
Number of successful extensions: 1105
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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