Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20626
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 170 2e-43
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 169 3e-43
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 169 3e-43
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 103 3e-23
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 92 6e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 66 5e-12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 48 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 36 0.006
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.030
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.16
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.28
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.37
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.49
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.0
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 2.6
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 2.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.9
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 170 bits (413), Expect = 2e-43
Identities = 78/85 (91%), Positives = 81/85 (95%)
Frame = +3
Query: 255 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 434
GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 435 DCAVLIVAAGTGEFEAGISKNGQTR 509
DCAVLI+ GTGEFEAGISK+GQTR
Sbjct: 110 DCAVLIIGGGTGEFEAGISKDGQTR 134
Score = 101 bits (242), Expect = 1e-22
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +1
Query: 109 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMVK 261
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51
Score = 91.1 bits (216), Expect = 1e-19
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +2
Query: 509 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 688
EHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 689 GWHG 700
G+ G
Sbjct: 193 GFQG 196
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 169 bits (412), Expect = 3e-43
Identities = 77/85 (90%), Positives = 81/85 (95%)
Frame = +3
Query: 255 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 434
GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 435 DCAVLIVAAGTGEFEAGISKNGQTR 509
DCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 110 DCAILIIGGGTGEFEAGISKDGQTR 134
Score = 101 bits (242), Expect = 1e-22
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +1
Query: 109 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMVK 261
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51
Score = 91.1 bits (216), Expect = 1e-19
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +2
Query: 509 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 688
EHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 689 GWHG 700
G+ G
Sbjct: 193 GFQG 196
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 169 bits (412), Expect = 3e-43
Identities = 77/85 (90%), Positives = 81/85 (95%)
Frame = +3
Query: 255 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 434
GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109
Query: 435 DCAVLIVAAGTGEFEAGISKNGQTR 509
DCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 110 DCAILIIGGGTGEFEAGISKDGQTR 134
Score = 101 bits (242), Expect = 1e-22
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +1
Query: 109 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMVK 261
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51
Score = 91.1 bits (216), Expect = 1e-19
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +2
Query: 509 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 688
EHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+S
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
Query: 689 GWHG 700
G+ G
Sbjct: 193 GFQG 196
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 103 bits (246), Expect = 3e-23
Identities = 48/86 (55%), Positives = 58/86 (67%)
Frame = +3
Query: 252 NGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 431
+GKGSF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S
Sbjct: 219 SGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASS 278
Query: 432 ADCAVLIVAAGTGEFEAGISKNGQTR 509
AD AVL+V + FE G +NGQTR
Sbjct: 279 ADFAVLVVDSSQNNFERGFLENGQTR 304
Score = 55.6 bits (128), Expect = 6e-09
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPI 685
EHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPI
Sbjct: 305 EHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPI 362
Query: 686 SGWHG 700
S G
Sbjct: 363 SAISG 367
Score = 46.0 bits (104), Expect = 5e-06
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +1
Query: 121 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA 246
K +++VV GHVDSGKST G ++++ G I+ R+++K EA
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEA 216
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 92.3 bits (219), Expect = 6e-20
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = +3
Query: 255 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 434
GK S+ +W LD ERE+G T+++ FET +++DAPGH+ ++ NMI G SQA
Sbjct: 281 GKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQA 340
Query: 435 DCAVLIVAAGTGEFEAGISKNGQTR 509
D VL+++A GEFEAG + GQTR
Sbjct: 341 DIGVLVISARRGEFEAGFERGGQTR 365
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/48 (56%), Positives = 38/48 (79%)
Frame = +1
Query: 121 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMVKD 264
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E K+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKE 283
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = +2
Query: 509 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GYNPAA-VAFVP 682
EHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GYN V ++P
Sbjct: 366 EHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP 425
Query: 683 ISGWHG 700
+S + G
Sbjct: 426 VSAYTG 431
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 66.1 bits (154), Expect = 5e-12
Identities = 31/73 (42%), Positives = 46/73 (63%)
Frame = +3
Query: 255 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 434
G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 81 GQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATM 140
Query: 435 DCAVLIVAAGTGE 473
D A+++V+A G+
Sbjct: 141 DGAIIVVSATDGQ 153
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 509 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 637
EH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 159 EHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 115 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 201
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 282 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 461
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 462 GTG 470
G
Sbjct: 127 SAG 129
Score = 28.7 bits (61), Expect = 0.85
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 133 NIVVIGHVDSGKSTTTGHLIYKCG 204
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 285 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 452
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 453 VAAGTG 470
V A G
Sbjct: 155 VDASQG 160
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 240 GGPGNGKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNM 413
G +GK + A+ + + GIT I + F+ ++T +D PGH F
Sbjct: 178 GHVDHGKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMR 237
Query: 414 ITGTSQADCAVLIVAAGTG 470
G + AD VL+VA G
Sbjct: 238 KRGANIADIVVLVVAGDDG 256
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 109 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 204
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 455
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 109 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 204
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 455
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.5 bits (73), Expect = 0.030
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Frame = +3
Query: 285 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 407
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 408 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 509
+ D AVL++ A +G I+ + Q R
Sbjct: 161 EVERALRVLDGAVLVLCAVSGVQSQTITVDRQMR 194
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 133 NIVVIGHVDSGKSTTTGHLIYKCGGI 210
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 363 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 458
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 470
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 288 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 410
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 372 IIDAPGHRDFIKNMITGTSQADCAVLIV 455
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 303 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 455
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 271 LKDPLPFPGPPSRTSRWYVCQYHHIC 194
+ PL P PP +T + Y QY+ +C
Sbjct: 1 MSTPLIPPAPPKKTLQLYTPQYYGLC 26
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -2
Query: 455 YDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPE---SNIDCDTTLTLSL*FVQ 285
+ S+ R S +LDE+ S S ++ + EL E S++ C + + F
Sbjct: 17 HSPESSRETRFSAQQLLDELKDSYS--SPSVAIQLLELNEQAFSSLGCKLDIHIVQHFSL 74
Query: 284 YPSIFEGSFTISWASFSN 231
S+FE S ++W SFSN
Sbjct: 75 --SLFETSVGMNWKSFSN 90
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 591 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 680
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,296
Number of Sequences: 5004
Number of extensions: 59883
Number of successful extensions: 238
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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