Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20626
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                126   1e-29
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   9e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           90   1e-18
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              84   1e-16
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     42   5e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.39 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.39 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              31   0.90 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.1  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      29   3.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_36443| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   8.4  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  126 bits (305), Expect = 1e-29
 Identities = 57/59 (96%), Positives = 58/59 (98%)
 Frame = +3

Query: 255 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 431
           GKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 2   GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +1

Query: 109 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMV 258
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E++
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVL 50


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 39/99 (39%), Positives = 63/99 (63%)
 Frame = +3

Query: 213 QTYHREVREGGPGNGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 392
           + Y RE +E      + ++  +W LD  + ER++G T+++    F+T   + T++DAPGH
Sbjct: 177 EKYEREAKE----KNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232

Query: 393 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 509
           + F+ NMI+G +QAD  VL+++A  GEFE G  + GQTR
Sbjct: 233 KSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTR 271



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 26/51 (50%), Positives = 39/51 (76%)
 Frame = +2

Query: 509 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 661
           EHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 272 EHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 193 YKCGGIDKRTIEKFEKEAQE 252
           Y  G +DKRT+EK+E+EA+E
Sbjct: 166 YLTGQVDKRTLEKYEREAKE 185


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 36/62 (58%), Positives = 47/62 (75%)
 Frame = +3

Query: 324 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 503
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 504 TR 509
           TR
Sbjct: 61  TR 62



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +2

Query: 509 EHALLAFTLGVKQLIVGVNKMD 574
           EHA+L  +LGV QLIV +NK+D
Sbjct: 63  EHAILVRSLGVTQLIVAINKLD 84


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +3

Query: 288 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 467
           D ++ ER+RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 468 G 470
           G
Sbjct: 115 G 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 240 GGPGNGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMI 416
           G   +GK +   A     + A    GIT  I  +  +  S   +T ID PGH  F     
Sbjct: 35  GHVDHGKTTLLDALRNSSVAAGEAGGITQHIGAFLVKLPSGEKITFIDTPGHAAFNSMRA 94

Query: 417 TGTSQADCAVLIVAAGTG 470
            G +  D  VL+VAA  G
Sbjct: 95  RGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 315 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 461
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 109 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 204
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 360 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 470
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
 Frame = +3

Query: 288 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 428
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122

Query: 429 QADCAVLIVAAGTGEFEAGISKNGQTR 509
               A +I   GT   E G  ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 291 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 458
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 372 IIDAPGHRDFIKNMITGTSQADCAVLIV 455
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 124 THINIVVIGHVDSGKSTTTGHLIY 195
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 127 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQEMVKDPSNML 279
           H+   VIGH+    ST  GHLI     C  + + + + F+++   + K  +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 282  VLDKLKAERERGITI 326
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 133  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 231
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_36443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 355 LVSNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPFPGPPSRTSRWY 218
           ++ N+ RAI +          L  T  Y +DPL    P  RT R+Y
Sbjct: 28  MIDNYSRAIDLFRRFDVDETPLLGTPPYYRDPLIRDTPLLRTPRYY 73


>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 440

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 497 RSNPEHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF 676
           R +P H   A     + + + + K+  +   +     EE+  E+   + + G +PA V  
Sbjct: 194 RQSPLHGDHAIQKATQSVAIPIPKITRSSEGHQRRSLEELNTEIQKLVLRPGDDPAEVKL 253

Query: 677 V-PISG 691
           + P+ G
Sbjct: 254 IEPVDG 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,157,706
Number of Sequences: 59808
Number of extensions: 447089
Number of successful extensions: 1303
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)