Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20625
         (711 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22SF7 Cluster: Putative uncharacterized protein; n=1; ...    35   2.3  
UniRef50_UPI0000E462EF Cluster: PREDICTED: similar to CG31332-PD...    34   3.0  
UniRef50_Q22SF9 Cluster: Putative uncharacterized protein; n=2; ...    33   5.2  
UniRef50_UPI000155B9C3 Cluster: PREDICTED: similar to major basi...    33   6.9  
UniRef50_A7DAV8 Cluster: Putative uncharacterized protein precur...    33   9.2  
UniRef50_Q8CG65 Cluster: SCO-spondin precursor; n=10; Eutheria|R...    33   9.2  

>UniRef50_Q22SF7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2420

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 215 PPANQAYQSQSQSRSKAKISITIMLIILLCP-LERTQLQLVQQFQTRAAMVGLKPKDSFK 391
           P     Y +   +  + +  IT + + ++CP LE    Q V Q+ +   + G  P+D +K
Sbjct: 127 PQGAIVYPTYQYNNFQLRSDITQLTLCIICPPLENKFTQFVGQYSSIKMITGFYPQDIYK 186

Query: 392 TLPNNQGINSK 424
            L N   +N +
Sbjct: 187 LLINENNMNDQ 197


>UniRef50_UPI0000E462EF Cluster: PREDICTED: similar to CG31332-PD,
           partial; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to CG31332-PD, partial -
           Strongylocentrotus purpuratus
          Length = 539

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +3

Query: 372 NPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQF---PEPKSGPV 509
           N R +  L  T  +S+PS EP++P+S +K+V  A  ++   P+ + GPV
Sbjct: 447 NDRQLRTLRITTGQSMPSMEPKVPKSSTKAVRIAAPKYKSTPKGRPGPV 495


>UniRef50_Q22SF9 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2323

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 215 PPANQAYQSQSQSRSKAKISIT-IMLIILLCPLERTQLQLVQQFQTRAAMVGLKPKDSFK 391
           P     Y +  QS  + +  IT + L I+  PLE    Q V Q+ +   + G  P D+ K
Sbjct: 113 PQGGLVYPTFQQSNFQFRSDITQLTLCIICPPLENKFTQFVGQYSSIKMITGFYPPDTAK 172

Query: 392 TLPNNQGINSK 424
            + N   +N +
Sbjct: 173 LIINENNMNDQ 183


>UniRef50_UPI000155B9C3 Cluster: PREDICTED: similar to major basic
           protein; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           similar to major basic protein - Ornithorhynchus
           anatinus
          Length = 335

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 360 WWVSNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVQGQN-QYGVN 536
           W    P+T    C T+   +PS+  Q+  S   SVSR+  +   P + P+  Q  Q+  +
Sbjct: 222 WAFGQPQTCGGRCVTLCTRVPSSPEQVGTSLLDSVSRSLTRLTRPPTIPLHPQRIQWNAD 281

Query: 537 QP 542
           +P
Sbjct: 282 RP 283


>UniRef50_A7DAV8 Cluster: Putative uncharacterized protein
           precursor; n=1; Methylobacterium extorquens PA1|Rep:
           Putative uncharacterized protein precursor -
           Methylobacterium extorquens PA1
          Length = 160

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 129 KATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSR 248
           ++ +T Q  P ++ R R C  I S  HG+HPP +   VSR
Sbjct: 65  RSEQTVQVGPGRIGRLR-CPGIESVHHGIHPPVEIPSVSR 103


>UniRef50_Q8CG65 Cluster: SCO-spondin precursor; n=10; Eutheria|Rep:
            SCO-spondin precursor - Mus musculus (Mouse)
          Length = 4998

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 514  PCTGPDFGSGNCSVALETDFEPDRGSCG 431
            PC GP  GSGNC       +EP   SCG
Sbjct: 3783 PCPGPGCGSGNCFWTSWAPWEPCSRSCG 3810


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,872,431
Number of Sequences: 1657284
Number of extensions: 12126978
Number of successful extensions: 34835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34819
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)