Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20625
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.3  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 165 LNRKRKCKEISSTQHGLHPPTKPTRVSRN 251
           +NR  +  E+   Q   +PPTKP    R+
Sbjct: 534 INRHLRGNELLPMQQSQNPPTKPYGTCRS 562


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 372 NPRTVSKLCPTIRESIPSAEPQLPRS--GSKSVSRATEQFPE 491
           +PRT     P  ++  P+AE + PR+      ++R   +F E
Sbjct: 208 SPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEFAE 249


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 500 RSSARPEPVWSEPT 541
           R++A  E +WSEPT
Sbjct: 538 RAAALGEVLWSEPT 551


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 363 WVSNPRTVSK 392
           W+ NPRT+++
Sbjct: 464 WIQNPRTITE 473


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 72  HERFSTFRKK*SVGSLTWSKAT 137
           H+R++T+    S G L W   T
Sbjct: 668 HQRYTTYSDVWSFGVLLWEIVT 689


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,317
Number of Sequences: 336
Number of extensions: 2957
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)