Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20625
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   3.5  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    27   3.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.6  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.6  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   8.1  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   8.1  

>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 381 TVSKLCPTIRESIPSAEPQLPRSGSKSVS 467
           TVS   P+  E  PS+ P LP +GS+S S
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSS 142


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 150 RKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKSV 275
           +KP K ++ RK   +S   H L PPT P+R     VPR  S+
Sbjct: 157 KKPSKPSKPRKKVPVS---HPL-PPTPPSREEHVSVPRESSL 194


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 363 WVSNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQ 482
           +V+NP   S+ CPT +  +  A   +   GS+   + T Q
Sbjct: 197 FVTNPHADSQECPTPQSLLMRASHHMSERGSQQAHQTTPQ 236


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 105 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPT 236
           S+  L  S A K  Q+ P K  R+R      S + GL+P   PT
Sbjct: 342 SLSPLDHSSAEKEMQKAPAKNKRRRT----GSLETGLYPKESPT 381


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 93  RKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPP----TKPTRVSRNRVP 260
           R+K  + S     + K   + P K ++KRK  E+S     LH P     + T+ ++N+  
Sbjct: 125 RRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKK 184

Query: 261 RPKS 272
           + ++
Sbjct: 185 KKRN 188


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/48 (20%), Positives = 25/48 (52%)
 Frame = +3

Query: 132 ATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKSV 275
           ++   +RKP +  +    K  +S+ + +  PT PT+++      P+++
Sbjct: 80  SSSEDERKPARHPQSSSQKPFASSTYNVELPTSPTKITNIGQSSPRAL 127


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 171 RKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPK 269
           RK +    ++ Q  L PP +PT  + + VP+ K
Sbjct: 94  RKIQKNRAANLQRTLQPPKRPTPSAASEVPKKK 126


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 444 RSGSKSVSRATEQFPEPKSGPV 509
           RS S+S+S  TEQ   PK  PV
Sbjct: 186 RSSSRSISPVTEQPQSPKIQPV 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,935
Number of Sequences: 5004
Number of extensions: 48430
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)