Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20625
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 31 0.90
01_04_0144 - 16703232-16704049,16704148-16704331 29 2.8
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 29 3.6
08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259... 29 3.6
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294... 29 4.8
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 29 4.8
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 29 4.8
02_05_0496 - 29499959-29500653,29501039-29501093 29 4.8
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 28 6.4
12_01_0827 - 7662180-7662192,7662451-7662764 28 8.4
11_06_0272 + 21806681-21806908,21806991-21807233,21807318-218074... 28 8.4
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 369 SNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVQGQN 521
S+PRTV + + R S P P P+S SK S A ++ P QG+N
Sbjct: 558 SSPRTVQRKAESERRSRP---PVSPKSPSKKSSEAASPGGRTRTKPSQGKN 605
>01_04_0144 - 16703232-16704049,16704148-16704331
Length = 333
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +2
Query: 215 PPANQAYQSQSQSRSKAKISITIMLIILLCPLERTQLQLVQQFQTRAAMVGLKPKDSFKT 394
P AN YQ Q S + I + + + + P QLQ++ F T + M P S+ T
Sbjct: 200 PAAN--YQQQMAMASASIIQVPMQMQM---PSMSDQLQMLDDFSTGSLMAPPPPPPSYST 254
Query: 395 LP 400
LP
Sbjct: 255 LP 256
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 369 SNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGP 506
S P T S+ P + S PS++P P + V + P P+ P
Sbjct: 32 SQPTTTSRSIPVVLPSAPSSKPPPPTQTAPPVPVVISEPPPPQPQP 77
>08_01_1022 +
10323158-10323393,10323486-10323531,10325887-10325941,
10326027-10326107,10326189-10326400
Length = 209
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 429 EPQLPRSGSKSVSRATEQFPEPKSGPVQGQNQYGVNQP 542
+PQ PR KSV ATE+F + + G N V P
Sbjct: 162 KPQPPRPNKKSVRAATEEFLAKAALELSGHNDSKVKGP 199
>05_05_0192 -
23128460-23128502,23129130-23129216,23129299-23129443,
23130812-23130872,23131046-23131164,23131320-23131374
Length = 169
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 142 VFVALDHVNDPTDYFFRNVENLSWF 68
VF DH D+FF++ EN+S+F
Sbjct: 52 VFSTKDHRQVKNDFFFKSAENISFF 76
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 142 VFVALDHVNDPTDYFFRNVENLSWF 68
VF DH D+FF++ EN+S+F
Sbjct: 52 VFSTKDHRQVKNDFFFKSAENISFF 76
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 291 LSCCAHWNVPSYS*SNNSKPGQLWWVSNPRTVSKL 395
LSC +H P + S S+ G +W V + +SKL
Sbjct: 750 LSCSSHSEEPKVNGSERSQAGSVWDVFRRQDISKL 784
>02_05_0496 - 29499959-29500653,29501039-29501093
Length = 249
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +3
Query: 399 PTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVQGQNQYGVNQP 542
P + P AEP+ P+ G S PEP P Q Q Q QP
Sbjct: 109 PPPAQDAPPAEPKPPKRGKNKKSGRVRFGPEPPP-PEQQQQQQQQQQP 155
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 562 VNFRIKPNMLLIIQINYTCKLGSMDTILGKLPNWP 666
+NF PN L Q+ C GS ILG+L WP
Sbjct: 303 LNFLALPNPELADQVEAICSCGSWKGILGRL--WP 335
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 354 QLWWVSNPRTVSKLCPTIRESIPSAEPQ-LPRSGSKSVSRATEQFPEPKSG 503
Q WW+ P+T + P+ R P+A Q LPR S P PK+G
Sbjct: 18 QKWWICTPKTQQTVVPSARG--PTATDQVLPRQRSD-----RSACPRPKNG 61
>11_06_0272 +
21806681-21806908,21806991-21807233,21807318-21807444,
21807822-21808036
Length = 270
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/77 (23%), Positives = 27/77 (35%)
Frame = +3
Query: 294 SCCAHWNVPSYS*SNNSKPGQLWWVSNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRA 473
SCCA + S+ G+LWW R L + + PS +G+ + A
Sbjct: 8 SCCASTSARPLVRRAGSRNGKLWWAGGVRKARLLSISATAAAPSGVDYAAGTGAAADDDA 67
Query: 474 TEQFPEPKSGPVQGQNQ 524
V G N+
Sbjct: 68 VAALKVKLLSAVSGLNR 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,660,403
Number of Sequences: 37544
Number of extensions: 342819
Number of successful extensions: 1005
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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