Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20625
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028) 32 0.53
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_11497| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_38668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014) 29 3.7
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_15113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34151| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_6389| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_12187| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.6
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_13036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
Length = 1736
Score = 31.9 bits (69), Expect = 0.53
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 354 QLWWVSNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVQGQNQYGV 533
QL W+SNP + + C IR+ + P SGS + P P+S G+ GV
Sbjct: 525 QLTWLSNP--LCRAC--IRDDVLVIVIDSPSSGSNGIRGVVSSSPAPRSADASGKLSEGV 580
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 78 RFSTFRKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRV 257
+ S ++++ S+ WS K +KP L + +K + + HG + T S +
Sbjct: 2517 QLSNYKRRWHKSSIAWSSFEKRQLQKPSSLQQSKKKDDPAGGSHG---KNRSTSFSGEKK 2573
Query: 258 PRPKS 272
RPKS
Sbjct: 2574 KRPKS 2578
>SB_11497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 138 KTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKS 272
KT+++KPI L+R R ++ + +GL TR+ R V PK+
Sbjct: 101 KTNKKKPIGLDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVKNPKA 145
>SB_38668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 111 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKS 272
GS T K +T ++ P+ +R R ++ + +GL P TR+ R V PK+
Sbjct: 4 GSST-KKKKRTKKKSPLAWDRTRSEEQNGNHTYGLPNPYGSTRLLRKAVKNPKA 56
>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
Length = 399
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 399 PTIRESIPSAEPQLPRSG--SKSVSRATEQFPEPKSGPVQGQ-NQYGVNQ 539
P +R++IPS+ LPR G +R + P PK V + +Q G N+
Sbjct: 229 PRVRKTIPSSTDSLPRPGRPPSPSTRGMKPLPPPKKPDVVAEKDQKGGNE 278
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 141 FLWLWTMSMTPPIIFSGMWRTFRGSNSAVVVLISTTKSMTSEDS 10
FL++ S T PI++S +TFR + ++ + ST +S +S S
Sbjct: 634 FLFVLVNSCTNPILYSWRLKTFRNALKKLLGIKSTRQSSSSSTS 677
>SB_15113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 111 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKS 272
GS T K +T ++ P+ +R R ++ + +GL TR+ R V PK+
Sbjct: 4 GSSTKEKKKQTKKKSPLAWDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVKNPKA 57
>SB_34151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 111 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKS 272
GS T K T+T ++ P+ +R R ++ + +GL TR+ R V PK+
Sbjct: 4 GSST-KKKTRTKKKSPLAWDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVRNPKA 56
>SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +3
Query: 69 NHERFSTFRKK*SV---GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTR 239
+HE S +KK + GS T K +T ++ P+ +R R ++ + +GL TR
Sbjct: 146 DHELRSLLKKKDAQRLRGSCT-KKKKRTKKKSPLAWDRTRSEEQNGNHTYGLPNRYGSTR 204
Query: 240 VSRNRVPRPKS 272
+ R V PK+
Sbjct: 205 LLRKAVKNPKA 215
>SB_6389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 138 KTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKS 272
KT+++ P+ +R R +E S +GL TR+ R V PK+
Sbjct: 8 KTNKKSPLAWDRTRSEEENGSHTYGLPNRYGSTRLLRKAVKNPKA 52
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 141 TSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRN--RVPRP 266
+S R +K +K+KCK S T+ P +P R S++ R+ RP
Sbjct: 563 SSGRSKVKRKKKKKCKSKSPTK--ADSPQRPLRRSKSSKRIGRP 604
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 399 PTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVQGQNQY 527
PTI+ P+ +PQ G S S ++Q P P P+Q Q+QY
Sbjct: 437 PTIQGQSPAQKPQ----GPPSQSTPSQQAP-PTKQPMQPQHQY 474
>SB_12187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 138 KTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKS 272
KT+++KP+ +R R ++ + +GL TR+ R V PK+
Sbjct: 8 KTNKKKPLAWDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVKNPKA 52
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 369 SNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVQGQNQYG 530
+NP +S P RE I + Q+ RSGS + ++ +P+ G +GQ + G
Sbjct: 104 ANPYEIS---PFTREVIENNRGQMFRSGSGTSKPNQKRMMDPEKGTWRGQEERG 154
>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 438 LPRSGSKSVSRATEQFPEPKSGPVQGQNQYGV 533
LP S S R T PEP GPV+G GV
Sbjct: 331 LPSPKSASPPRHTLPRPEPIGGPVRGSEPKGV 362
>SB_13036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 111 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKS 272
GS T K T +++P+ +R R ++I + +GL TR+ R V PK+
Sbjct: 4 GSSTKKKKT-LKKKRPLAWDRTRSEEQIGNHTYGLPNRYGSTRLLRKAVKNPKA 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,033,029
Number of Sequences: 59808
Number of extensions: 392819
Number of successful extensions: 2398
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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