Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20625
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28140.1 68418.m03398 hypothetical protein                          29   2.3  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    29   4.0  
At1g30135.1 68414.m03684 expressed protein                             29   4.0  
At3g60000.1 68416.m06699 hypothetical protein  contains Pfam pro...    28   7.0  
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    27   9.3  

>At5g28140.1 68418.m03398 hypothetical protein 
          Length = 212

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 201 TQHGLHPPTKPTRVSRNRVPRPK 269
           T  G   PT+ TR+ RN VPRPK
Sbjct: 161 TPRGRCKPTRGTRLGRNFVPRPK 183


>At2g36380.1 68415.m04464 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -3

Query: 541 GWFT-PYWFWPCTGPDFG 491
           G+FT PYWFW C G   G
Sbjct: 765 GFFTEPYWFWICIGALLG 782


>At1g30135.1 68414.m03684 expressed protein
          Length = 131

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 111 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKS 272
           G + +S      Q + I     R+ K  SS+ +G  PP K T    N++P PK+
Sbjct: 52  GKMCFSSDVTHLQARSIISIASREMKTKSSS-NGSDPPNKSTSFHHNQLPNPKA 104


>At3g60000.1 68416.m06699 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 451

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 129 KATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRVPRPKSV*QLC*LSCC 302
           K++K S  KP+  N  R    + +    + PP   +R+S+ R+P    + QL  +S C
Sbjct: 108 KSSKPSHLKPLNENSHR----LETPTPMVPPPPSRSRLSQQRLPTATRLLQLSGISAC 161


>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 372 NPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKS-GPVQGQNQYGVNQP 542
           +P       PT     PSA  + P +  KS S ++ +   P + GPV  ++ Y  + P
Sbjct: 33  SPTAAPTKAPTATTKAPSAPTKAPAAAPKSSSASSPKASSPAAEGPVP-EDDYSASSP 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,756
Number of Sequences: 28952
Number of extensions: 266963
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)