Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20624
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223...    29   1.7  
03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120     28   2.9  
05_04_0236 + 19301730-19302222,19302308-19302440,19302640-19303036     28   3.9  
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835     27   5.1  
03_02_1019 + 13244003-13245202,13245347-13245493,13245772-132460...    27   6.8  
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312...    24   9.9  

>06_01_0308 +
           2229025-2229260,2229448-2230145,2230377-2230469,
           2230815-2231992
          Length = 734

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 149 AFKGTDKCDRSSSYCVPILGRGYEAGGYKCECLQG 253
           A K +  C  ++S C+ ++    EA GY+C C QG
Sbjct: 269 ALKESYACVANNSKCIDVI----EAPGYRCNCTQG 299


>03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120
          Length = 197

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 381 CGAGQAXLKHVDARLLVEYDVLELGLHDLP 292
           CG   A ++H+ ARLL +     LG H  P
Sbjct: 166 CGPANADMRHLIARLLAKDPAARLGSHAAP 195


>05_04_0236 + 19301730-19302222,19302308-19302440,19302640-19303036
          Length = 340

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +1

Query: 43  GQRQSQTRVQRCGGGDDVIAV 105
           G  QSQ RV R GG DDV AV
Sbjct: 65  GGCQSQCRVSRDGGDDDVAAV 85


>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
          Length = 379

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 183 ELLSHLSVPLNALDT*YLSGHWLMSRDSNDIVTATA 76
           E  + L + +  LDT Y+SG   +S+D N I T  A
Sbjct: 298 EQQAKLGIAIQFLDTTYISGFCQLSKDLNKICTLHA 333


>03_02_1019 +
           13244003-13245202,13245347-13245493,13245772-13246099,
           13246930-13246994
          Length = 579

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 79  GGGDDVIAVSGHQPVPGQVLRVQ 147
           GGG++V+ V GH   PG  + ++
Sbjct: 137 GGGNEVVGVDGHDSGPGVAVELE 159


>03_05_0388 +
           23726957-23727418,23730016-23730262,23731072-23731220,
           23731313-23731597,23731665-23731889,23734251-23734445
          Length = 520

 Score = 23.8 bits (49), Expect(2) = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 368 WPAPQPWGSAP 400
           W  PQPWG  P
Sbjct: 304 WGPPQPWGPPP 314



 Score = 21.0 bits (42), Expect(2) = 9.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 365 AWPAPQPWG 391
           A  APQPWG
Sbjct: 297 AMAAPQPWG 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,892,351
Number of Sequences: 37544
Number of extensions: 192629
Number of successful extensions: 639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)