Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20624
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29273| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 59 2e-09
SB_15172| Best HMM Match : EGF_CA (HMM E-Value=2.3) 46 1e-05
SB_55908| Best HMM Match : Sushi (HMM E-Value=1.6e-12) 36 0.020
SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45) 28 3.0
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_42940| Best HMM Match : TB (HMM E-Value=5.2) 27 5.3
SB_58558| Best HMM Match : EGF (HMM E-Value=0) 27 9.2
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 27 9.2
>SB_29273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 58.8 bits (136), Expect = 2e-09
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 65 EFKGAVAVTMSLLSLDINQCPDKY---YVSNAFKGTDKCDRSSSYCVPILGRGYEAGGYK 235
E +G + + L ++DINQC + + F GT C ++ CVP+ GRG+ AG YK
Sbjct: 428 ERRGVTTIDIELTNVDINQCEETLGGTFQFGVFAGTHHCKNETTQCVPVTGRGFRAGSYK 487
Query: 236 CECLQG 253
C C G
Sbjct: 488 CICKPG 493
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 58.8 bits (136), Expect = 2e-09
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Frame = +2
Query: 8 WAVTYAAPFFGWDSVKVKLEFKGAVAVTMSLLSLDINQCP-DK---YYVSNA-----FKG 160
W VT+ APFF S +F G V++ + L +DINQC DK Y S F G
Sbjct: 320 WMVTFLAPFFNETS-----QFLGVVSIDIELNDIDINQCDSDKKTEYEGSEVTSFLEFLG 374
Query: 161 TDKCDRSSSYCVPILGRGYEAGGYKCECLQG 253
T +C + S+ CVPI G++ G Y CEC +G
Sbjct: 375 THRC-KPSTKCVPIPNEGFKRGSYVCECKKG 404
Score = 53.6 bits (123), Expect = 7e-08
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Frame = +2
Query: 8 WAVTYAAPFFGWDSVKVKLEFKGAVAVTMSLLSLDINQC--------PDKYYVSNA---- 151
W VTY APF+ + +F G V++ + L ++DINQC D + N
Sbjct: 1018 WMVTYLAPFYNASN-----QFLGVVSLDIELNAVDINQCDAEKEDHASDYHLTDNVEYSA 1072
Query: 152 ----FKGTDKCDRSSSYCVPILGRGYEAGGYKCECLQG 253
F GT +C + S+ CVP+ +G++ G Y+C+C G
Sbjct: 1073 MFVEFLGTHRC-KPSTQCVPVANQGFQRGSYECKCKPG 1109
>SB_15172| Best HMM Match : EGF_CA (HMM E-Value=2.3)
Length = 161
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Frame = +2
Query: 74 GAVAVTMSLLSLDINQCP-DK---YYVSNA-----FKGTDKCDRSSSYCVPILGRGYEAG 226
G V++ + L +DINQC DK Y S F GT +C + S+ CVPI G++ G
Sbjct: 2 GVVSIDIELNDIDINQCDSDKKTEYEGSKVTGFLEFLGTHRC-KPSTKCVPIPNEGFKRG 60
Query: 227 GYKCECLQG 253
Y CEC +G
Sbjct: 61 SYVCECKKG 69
>SB_55908| Best HMM Match : Sushi (HMM E-Value=1.6e-12)
Length = 465
Score = 35.5 bits (78), Expect = 0.020
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 35 FGWDSVKVKLEFKGAVAV-TMSLLSLDINQCPDKYYVSNAFKGTDKCDRSSSYCVPILGR 211
FG D + L G + ++L+ CP + V + K TDKCD +S+ C
Sbjct: 182 FGCDHINECLVNNGGCSHGCVNLVGRYYCSCPKGFEVGASGKTTDKCDDASTTC-----H 236
Query: 212 GYEAGGYKCECLQG 253
YE G Y+C C +G
Sbjct: 237 NYE-GDYECRCRKG 249
>SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45)
Length = 348
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 131 KYYVSNAFKGTDKCDRSSSYCVPILGRGYEA-GGYKCECLQG 253
KY + F D+C S+ C R G YKCEC G
Sbjct: 100 KYDLVFIFADIDECSGSNDVCKDSNARCINTPGSYKCECPSG 141
>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 140 VSNAFKGTDKCDRSSSYCVPILGRGYEA-GGYKCECLQG 253
V+N + D+C ++ C GR GGY+CEC +G
Sbjct: 125 VTNKCEDVDECKTITNICAN--GRCVNTNGGYRCECPRG 161
>SB_42940| Best HMM Match : TB (HMM E-Value=5.2)
Length = 153
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 352 CRCASPCRV*CSGTRPPRSAR 290
C C + C C GT PPR A+
Sbjct: 9 CSCWTMCSCCCKGTAPPRYAK 29
>SB_58558| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 122 CPDKYYVSNAFKGTDKCDRSSSYCVPILGRGYEAGGYKCECLQG 253
C +Y D+C SS+ CV EAGGY C C G
Sbjct: 643 CTPGWYGKACEHDVDEC--SSNPCVNGGTCNDEAGGYTCTCAAG 684
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Frame = +2
Query: 155 KGTDKCDRSSSYCVPILG-------RGYEAGGYKC 238
+GTD+CD + + CV G GY GY+C
Sbjct: 723 EGTDECDHTLATCVNTPGSYACVCPAGYTVSGYQC 757
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,444,139
Number of Sequences: 59808
Number of extensions: 187450
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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