Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20624
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 143  SNAFKGTDKCDRSSSYCVPILGRGYEA-GGYKCECLQG 253
            SN+    D+C+ S + C P         G Y+CEC +G
Sbjct: 1713 SNSCVDIDECEESRNNCDPASAVCVNTEGSYRCECAEG 1750


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 164  DKCDRSSSYCVPILGRGYEAGGYKCECLQG 253
            D+C+  S YC          GG++C C  G
Sbjct: 911  DECEEKSDYCDSFATCNNTDGGFECHCPVG 940


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 93  CHCCLWTSTSARTSTTC 143
           C  C  T+T+ RTSTTC
Sbjct: 84  CGYCTGTATTTRTSTTC 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,161,578
Number of Sequences: 27780
Number of extensions: 133816
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)