Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20624
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.49 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.0  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 67  VQRCGGGDDVIAVSGHQPVPGQVLRVQRIQGNG 165
           VQ   G   V  V G Q VPG +  VQ++ G G
Sbjct: 856 VQGVQGVQGVQGVQGVQGVPGLLQGVQQVFGQG 888



 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 97  IAVSGHQPVPGQVLRV 144
           IAV   Q VPG V+RV
Sbjct: 522 IAVHSEQNVPGAVVRV 537


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 393 EPQGCGAGQ 367
           +PQGCGAG+
Sbjct: 397 DPQGCGAGK 405


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 393 EPQGCGAGQ 367
           +PQGCGAG+
Sbjct: 397 DPQGCGAGK 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,477
Number of Sequences: 438
Number of extensions: 1750
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)