Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20624
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ...    29   1.9  
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein...    27   5.7  
At3g61390.2 68416.m06872 U-box domain-containing protein several...    27   5.7  
At3g61390.1 68416.m06871 U-box domain-containing protein several...    27   5.7  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    27   5.7  
At4g38225.3 68417.m05398 expressed protein                             27   7.5  
At4g38225.2 68417.m05396 expressed protein                             27   7.5  
At4g38225.1 68417.m05397 expressed protein                             27   7.5  
At1g02650.1 68414.m00215 DNAJ heat shock N-terminal domain-conta...    27   7.5  

>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
           similar to PIR:T05288 from [Arabidopsis thaliana]
          Length = 303

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 186 DELLSHLSVPLNALDT*YLSGHWL 115
           D+L++HL VPL+ +DT    G W+
Sbjct: 23  DDLINHLDVPLDDIDTTNGEGDWV 46


>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
           contains similarity to CONSTANS homologs
          Length = 373

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 93  CHCCLWTSTSARTSTTCPTHSRERIN 170
           C  C W+    + STT   H R+ IN
Sbjct: 68  CQNCDWSGHDGKNSTTTSHHKRQTIN 93


>At3g61390.2 68416.m06872 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 435

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 82  GGDDVIAVSGHQPVPGQVLRVQRIQ 156
           GG +   V  HQP+PG++   Q+++
Sbjct: 59  GGKEFCIVHVHQPIPGEMFHEQKLR 83


>At3g61390.1 68416.m06871 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 373

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 82  GGDDVIAVSGHQPVPGQVLRVQRIQ 156
           GG +   V  HQP+PG++   Q+++
Sbjct: 59  GGKEFCIVHVHQPIPGEMFHEQKLR 83


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin my5A
           (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 235 VRVPAGLEYPFEDPT-TYYDGQIVEAEFQNIILDKETR 345
           V+V  G +   EDP   + DG++VEA  Q I ++ +T+
Sbjct: 22  VKVTVGSQVWVEDPDEAWLDGEVVEANGQEIKVNCQTK 59


>At4g38225.3 68417.m05398 expressed protein
          Length = 365

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 165 SVPLNALDT*YLSGHWLMSRDSNDIVTATAPLNSSLTLTLSQP 37
           S PL AL   + S  W + R +   ++ +A  +S + L  SQP
Sbjct: 25  SPPLKALSFPFSSSLWFIHRTTISPLSCSAESSSEIALAQSQP 67


>At4g38225.2 68417.m05396 expressed protein
          Length = 308

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 165 SVPLNALDT*YLSGHWLMSRDSNDIVTATAPLNSSLTLTLSQP 37
           S PL AL   + S  W + R +   ++ +A  +S + L  SQP
Sbjct: 25  SPPLKALSFPFSSSLWFIHRTTISPLSCSAESSSEIALAQSQP 67


>At4g38225.1 68417.m05397 expressed protein
          Length = 363

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 165 SVPLNALDT*YLSGHWLMSRDSNDIVTATAPLNSSLTLTLSQP 37
           S PL AL   + S  W + R +   ++ +A  +S + L  SQP
Sbjct: 25  SPPLKALSFPFSSSLWFIHRTTISPLSCSAESSSEIALAQSQP 67


>At1g02650.1 68414.m00215 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 513

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = -2

Query: 117 LMSRDSNDIVTATAPLNSSLTLT 49
           + S+D NDIV+A + LNS+L+++
Sbjct: 25  ITSQDPNDIVSALSLLNSTLSIS 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,838,675
Number of Sequences: 28952
Number of extensions: 125409
Number of successful extensions: 357
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)