Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20623
         (562 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    28   0.18 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   2.2  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   3.0  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   3.9  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   3.9  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   6.8  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   6.8  
AJ441131-4|CAD29633.1|  566|Anopheles gambiae putative apyrase/n...    23   6.8  
AJ439398-3|CAD28126.1|  566|Anopheles gambiae putative 5' nucleo...    23   6.8  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   9.0  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 0.18
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -1

Query: 424 RNPSRGQPGPHGLRRTL-PPPYPHRRTSARKHAWPLDRPLS 305
           RNP R  P   G   +   PP   R  S R  +WP  RP S
Sbjct: 255 RNPRRRSPRSGGRWPSCRSPPARRRSRSTRPTSWPRSRPTS 295


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 277 MEKKRLKTQM--KEVDLEAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
           +E +  +TQ   K  DL+AK A      G+G  E E   A EDL   +K  EE
Sbjct: 758 VEARETQTQCSAKVKDLQAKIAD-----GKGHRERELKSAEEDLKRSKKKSEE 805


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 412 RGQPGPHGLRRTLPPPYP 359
           RG+PGP G    L PP P
Sbjct: 627 RGEPGPKGEPGLLGPPGP 644



 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 409 GQPGPHGLR 383
           GQPGP GLR
Sbjct: 486 GQPGPEGLR 494


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -1

Query: 478 STLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWPL 320
           ST   PHP  + SP   +   S    G      +   P+P+   +A   A PL
Sbjct: 740 STHPSPHPATRASPSSPIVATSSSGGGGSNTPNSAAAPHPYYTAAAMAAASPL 792


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 368 RRESSPKPVRTWLPSRRITKKSAWTPLKARV 460
           R   S K V+ W  +RR+ +K    P  A +
Sbjct: 232 RLRLSEKQVKIWFQNRRVKRKKGDAPFGAEL 262


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 516 NGAVRHKRYFIGLVLFGSLTLAFSGVH 436
           NG   H  +++ LVL  S   A S V+
Sbjct: 206 NGVHNHSNHYLDLVLSNSAAAACSSVY 232


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 214  LFLFLCCNHFGSVKLMNPRAQMEKKRL 294
            LFL L  ++FGS  L  P A  E  ++
Sbjct: 1024 LFLALLLSNFGSSSLSAPTADNETNKI 1050


>AJ441131-4|CAD29633.1|  566|Anopheles gambiae putative
           apyrase/nucleotidase protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 334 AFVHWYVGEGMEEGEFSEA 390
           AFV +YVG G  E E++ A
Sbjct: 387 AFVDYYVGRGEAEHEWTYA 405


>AJ439398-3|CAD28126.1|  566|Anopheles gambiae putative 5'
           nucleotidase protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 334 AFVHWYVGEGMEEGEFSEA 390
           AFV +YVG G  E E++ A
Sbjct: 387 AFVDYYVGRGEAEHEWTYA 405


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 201  LTRWSFSVSLLQPFWERKANESKSTNGKEAAQNSN 305
            L  W      +Q  W R   E  ST  K A  N N
Sbjct: 1627 LNHWRLIQKHMQHIWNRWHREYLSTLQKRAKWNKN 1661


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,966
Number of Sequences: 2352
Number of extensions: 11520
Number of successful extensions: 37
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)