Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20623
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    25   0.69 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.5  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 484 WLSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWP 323
           ++S  R PHPRL+R        P   +P      R   PP+P  R  A   A P
Sbjct: 160 YISQPRPPHPRLRRE-AEPEAEPGNNRPVYIPQPR---PPHPRLRREAEPEAEP 209



 Score = 24.2 bits (50), Expect = 0.91
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 484 WLSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWP 323
           ++S  R PHPRL+R        P   +P      R   PP+P  R  A   A P
Sbjct: 104 YISQPRPPHPRLRRE-AEPEAEPGNNRPVYIPQPR---PPHPRLRREAELEAEP 153


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 469 RLPHPRLQRSP 437
           R PHPRL+R P
Sbjct: 110 RPPHPRLRREP 120



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 469 RLPHPRLQRSP 437
           R PHPRL+R P
Sbjct: 136 RPPHPRLRREP 146


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 214 LFLFLCCNHFGSVKLMNPRAQME 282
           +F+F     F  VK+++ R+Q+E
Sbjct: 271 MFVFAALGEFVVVKVLDLRSQLE 293


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 352 RTSARKHAWPLD 317
           R  A KH WP D
Sbjct: 205 RVDAAKHMWPSD 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,285
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)