Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20623
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi... 125 2e-29
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi... 123 7e-29
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi... 123 9e-29
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 83 1e-16
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 83 1e-16
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 83 1e-16
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 83 1e-16
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 81 4e-16
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 45 3e-05
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 45 3e-05
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 45 3e-05
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 45 3e-05
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 45 3e-05
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 45 3e-05
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 45 4e-05
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 45 4e-05
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 45 4e-05
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 29 2.1
At3g25260.1 68416.m03155 proton-dependent oligopeptide transport... 29 2.8
At5g03910.1 68418.m00371 ABC transporter family protein ABC-type... 28 3.7
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 28 3.7
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot... 28 4.9
At2g01110.1 68415.m00019 thylakoid membrane formation protein / ... 28 4.9
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 27 6.5
At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing ... 27 6.5
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 27 6.5
At3g09070.1 68416.m01066 glycine-rich protein similar to hypothe... 27 6.5
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase... 27 6.5
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 27 6.5
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot... 27 6.5
>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
to GI:6984132 from [Euphorbia esula]
Length = 112
Score = 125 bits (301), Expect = 2e-29
Identities = 57/80 (71%), Positives = 67/80 (83%)
Frame = -2
Query: 240 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 61
MVAAKK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60
Query: 60 EYYALLAKTGVHHYSGNNIE 1
EYYA+LAK GVHHY+ NN++
Sbjct: 61 EYYAMLAKVGVHHYNRNNVD 80
>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
to ribosomal protein L30 GI:388034 from [Homo sapiens]
Length = 112
Score = 123 bits (297), Expect = 7e-29
Identities = 56/80 (70%), Positives = 66/80 (82%)
Frame = -2
Query: 240 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 61
MV KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60
Query: 60 EYYALLAKTGVHHYSGNNIE 1
EYYA+LAK GVHHY+GNN++
Sbjct: 61 EYYAMLAKVGVHHYNGNNVD 80
>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
luteus]
Length = 112
Score = 123 bits (296), Expect = 9e-29
Identities = 56/80 (70%), Positives = 66/80 (82%)
Frame = -2
Query: 240 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 61
MVA KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60
Query: 60 EYYALLAKTGVHHYSGNNIE 1
EYYA+LAK GVH Y+GNN++
Sbjct: 61 EYYAMLAKVGVHRYNGNNVD 80
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +1
Query: 325 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 441
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +1
Query: 325 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 441
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +1
Query: 325 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 441
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +1
Query: 325 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 441
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +1
Query: 325 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 441
AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 81.4 bits (192), Expect = 4e-16
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 325 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 435
+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG
Sbjct: 400 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 392 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 44.8 bits (101), Expect = 4e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 44.8 bits (101), Expect = 4e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 44.8 bits (101), Expect = 4e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 328 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 392 RKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 326 PSVLSCTGTSVRVWRRESSPKPVRTW 403
P+V+S S R WR SS P+R W
Sbjct: 41 PNVVSIPSLSRRSWRLASSDSPLRAW 66
>At3g25260.1 68416.m03155 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 515
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 287 FFSICALGFISFTLPKWLQQRNRKRPSSQLTPALL 183
FFS+C GF++ TL W+++ S ++ A+L
Sbjct: 177 FFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVL 211
>At5g03910.1 68418.m00371 ABC transporter family protein ABC-type
transport protein sll1276, Synechocystis sp., PIR:S77239
Length = 634
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 373 PPPYPHRRTSA--RKHAW-PLDRPLSF 302
PPP HRR+S+ KH + P RPLSF
Sbjct: 16 PPPLSHRRSSSLFLKHPFQPSPRPLSF 42
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 210 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 79
I + +++ KS Y GY Q+ +T R + KL+ I K PP
Sbjct: 7 IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50
>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 435
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 171 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 88
+GKY G + TLK L G + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325
>At2g01110.1 68415.m00019 thylakoid membrane formation protein /
cpTatC (APG2) identical to thylakoid membrane formation
protein (cpTatC) GI:15004994 from [Arabidopsis
thaliana]; contains Pfam profile PF00902: MttB family;
identical to cDNA apg2 for cpTatC GI:15004993
Length = 340
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 513 GAVRHKRYFIGLVLFGSLTLAFSGVHADFFVI 418
G R +R F+G ++FGS L ++G+ ++V+
Sbjct: 199 GLTRAERRFLGPIVFGSSLLFYAGLAFSYWVL 230
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 231 LQPFWERKANESKSTNGKEAAQNSNERGRSR 323
+QP E K + T+G E A+ S R RSR
Sbjct: 225 IQPATESKLKAREETHGTEEARGSTSRKRSR 255
>At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing
protein similar to DNA-binding protein DAG1/BBFa
GI:4581965 [Arabidopsis thaliana]
Length = 294
Score = 27.5 bits (58), Expect = 6.5
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Frame = -1
Query: 526 RNVKRCSAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPS---RGQPGPHGLRRTLPPPYPH 356
RN RC++ F + + L PR CR R P G R+ P+P+
Sbjct: 68 RNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKKLPFPN 127
Query: 355 RRTSARKHAWP-LDRPLSFEF*AAS 284
TS+ P L+ P F A+S
Sbjct: 128 SSTSSSTKNLPDLNPPFVFTSSASS 152
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = -1
Query: 472 LRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWPLDRPLSFEF 296
L P L P R+P+ +PGP +R P R + A PL L F F
Sbjct: 212 LHARQPYLNPDPFVNNRDPNAARPGPSNMRPLCPNAIRRHRQEKLERALPLLILLVFMF 270
>At3g09070.1 68416.m01066 glycine-rich protein similar to
hypothetical protein GB:AAD32765 [Arabidopsis thaliana]
Length = 685
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 256 LMNPRAQMEKKRLKTQMK--EVDLEAKRAFVHWYVGEGMEEGEFSEAREDL-AALEKDYE 426
L N +Q E++ L + + E+D+E +++ V V E +EGE E+L E+DY
Sbjct: 142 LWNLFSQDEQRNLPSNVTGGEIDVEPRKSSVAEPVLEVNDEGEAESDDEELEEEEEEDYV 201
Query: 427 EVG 435
E G
Sbjct: 202 EAG 204
>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK4) identical to MAP kinase kinase
4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
gi_13265419
Length = 366
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -1
Query: 487 HWLSTLRLPHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRRTSA 341
H++S P +RS +LL++P R P P L + LPPP P +S+
Sbjct: 309 HFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSSSSS 363
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 424 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKH 332
R +R +PG +G+ R+ PP P R S + H
Sbjct: 8 RQYARLEPGLNGVVRSYKPPVPGRSDSPKAH 38
>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 434
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 171 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 88
+GKY G + TLK L G + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,633,865
Number of Sequences: 28952
Number of extensions: 242175
Number of successful extensions: 931
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -