Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20622
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   118   6e-28
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   117   1e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    48   1e-06
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    48   1e-06
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    36   0.004
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    28   1.5  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   3.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.4  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   7.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   7.8  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  118 bits (285), Expect = 6e-28
 Identities = 52/81 (64%), Positives = 66/81 (81%)
 Frame = -2

Query: 293 GKILLRIQANFENLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTA 114
           GK +L  ++  + LR GKAKL++IA NAPPLRKSE+EYYA+L++  VHHYSGNNI+LGTA
Sbjct: 35  GKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLGTA 94

Query: 113 CGKYYRVCTLAITDPGDSDII 51
           CGK +RV  LA+ D GDSDI+
Sbjct: 95  CGKLFRVGVLAVIDAGDSDIL 115



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 27/45 (60%), Positives = 32/45 (71%)
 Frame = -3

Query: 373 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTFDKAK 239
           AP    +KK KK+ ++INS+LAL MKSGKY LGYK TLKT    K
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGK 52


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  117 bits (282), Expect = 1e-27
 Identities = 52/81 (64%), Positives = 65/81 (80%)
 Frame = -2

Query: 293 GKILLRIQANFENLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTA 114
           GK +L  ++  + LR GKAKL++IA N PPLRKSE+EYYA+L+K  VHHY+G NI+LGTA
Sbjct: 27  GKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHHYAGTNIDLGTA 86

Query: 113 CGKYYRVCTLAITDPGDSDII 51
           CGK +RV  LAITD GDSDI+
Sbjct: 87  CGKLFRVGVLAITDAGDSDIL 107



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = -3

Query: 361 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTFDKAK 239
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKT    K
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGK 44


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +3

Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
           +KRAFVHWYVGEGMEEGEFS+
Sbjct: 404 SKRAFVHWYVGEGMEEGEFSE 424



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +2

Query: 509 EAREDLAALEKDYEEVGMDS 568
           EAREDLAALE+DYEEVG DS
Sbjct: 424 EAREDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +3

Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
           +KRAFVHWYVGEGMEEGEFS+
Sbjct: 400 SKRAFVHWYVGEGMEEGEFSE 420



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +2

Query: 509 EAREDLAALEKDYEEVGMDS 568
           EAREDLAALE+DYEEVG DS
Sbjct: 420 EAREDLAALERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +3

Query: 453 KRAFVHWYVGEGMEEGEFSK 512
           ++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 242 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 108
           ++ +VI++K   P+RK  I+ +  L+  GVH    ++ EL   CG
Sbjct: 87  RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 399 VLLDSLAFTLPKWLQQRNRKRPSSQLTPAL 310
           VL   L ++L +WL   N K PS+Q +  L
Sbjct: 124 VLAKELGYSLIEWLNPMNLKEPSNQESDTL 153


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 290  SRFHHQSKAGVN*LDGLFLFLCCNHFGSVNANESKSTNGKE 412
            +R ++    GV  +    LF CC  FG+V  N   S   KE
Sbjct: 1143 NRINNSKPLGVFRIHDPSLFACCYQFGAVFVNGEGSMVNKE 1183


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 129 NVVPAVVVNTCLS*EGVVFNLRFP*RRSIFSDDNQLCFALSKVF 260
           N +P +++   L  E V+++L     R  + +DN L    SKVF
Sbjct: 173 NFLPQLLLPMALHEESVLYSLVASGYRLKYGNDNSLALQKSKVF 216


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 368 GSVN---ANESKSTNGKEAAQNSNERGRS 445
           GS+N   A+ +K+T+ +  AQN N  GR+
Sbjct: 38  GSINSRSASPNKATSRRNRAQNGNSNGRA 66


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -3

Query: 685  LFDTSFFYFISPECKTVRVRHKRYFIGLVLFGSLTLAFSGVHADFFVILLEGSQVLTGFE 506
            +F    F FI  + K      ++ FIGL+ +   +L      +D   +L EG +    F 
Sbjct: 1400 VFVKFIFPFIKNQMKNKNELIRQEFIGLLSYSIKSLTMVDAISDMQPLLYEGDEEANFFN 1459

Query: 505  N 503
            N
Sbjct: 1460 N 1460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,351
Number of Sequences: 5004
Number of extensions: 56028
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)