Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20622
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 126 2e-29
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 124 5e-29
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 123 1e-28
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 49 3e-06
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 49 3e-06
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 48 7e-06
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 48 7e-06
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 36 0.023
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 36 0.023
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 36 0.023
03_01_0034 + 318432-318825,318902-319851 36 0.023
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 36 0.023
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 36 0.023
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 36 0.023
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 34 0.12
03_01_0642 - 4702726-4703052,4703127-4703193,4703280-4703360,470... 31 1.1
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725... 30 2.0
01_06_1014 - 33810112-33811995 29 3.5
04_03_0771 + 19434460-19434987 29 4.6
11_06_0231 + 21531169-21531674,21533607-21533681,21535426-21535741 28 8.0
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 8.0
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 126 bits (303), Expect = 2e-29
Identities = 55/85 (64%), Positives = 64/85 (75%)
Frame = -2
Query: 293 GKILLRIQANFENLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTA 114
GK L + + LR K KL+I+A N PPLRKSEIEYYA+L K VHH+ GNN++LGTA
Sbjct: 66 GKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIEYYAMLGKVSVHHFHGNNVDLGTA 125
Query: 113 CGKYYRVCTLAITDPGDSDIITTLP 39
CGKYYRVC L+I DPGDSDII T P
Sbjct: 126 CGKYYRVCCLSIIDPGDSDIINTTP 150
Score = 55.2 bits (127), Expect = 5e-08
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = -3
Query: 484 SPTYQCTKARLASRSTSFI*VLSRFFSICALGFISIYAPKMVAAKKQKKTIESINSRLAL 305
+PT + + + S + LSR S + + + V A QKK+ ++IN++L L
Sbjct: 2 APTKKAVRFLIDCASLPLLVALSRCASHHFVAMFLLVSDWWVVAMMQKKSTDNINNKLQL 61
Query: 304 VMKSGKYCLGYKQTLKTFDKAK 239
VMKSGKY LGYK LKT +K
Sbjct: 62 VMKSGKYTLGYKTVLKTLRNSK 83
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 124 bits (300), Expect = 5e-29
Identities = 54/87 (62%), Positives = 66/87 (75%)
Frame = -2
Query: 293 GKILLRIQANFENLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTA 114
GK L + + LR K KLVI+A N PPLRKSEIEYYA+L K V+H++GNN++LGTA
Sbjct: 143 GKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLGKVSVYHFNGNNVDLGTA 202
Query: 113 CGKYYRVCTLAITDPGDSDIITTLPEA 33
CGKYYRVC L++ DPGDSDI LPE+
Sbjct: 203 CGKYYRVCCLSVVDPGDSDITKQLPES 229
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = -3
Query: 343 KKTIESINSRLALVMKSGKYCLGYKQTLKTFDKAK 239
KK E IN++L LVMKSGKY LGYK LKT +K
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSK 160
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 123 bits (297), Expect = 1e-28
Identities = 56/83 (67%), Positives = 64/83 (77%)
Frame = -2
Query: 293 GKILLRIQANFENLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTA 114
GK L + LR KAKLVII+ N PPLRKSEIEYYA+LAK VHH+ GNN++LGTA
Sbjct: 25 GKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTA 84
Query: 113 CGKYYRVCTLAITDPGDSDIITT 45
CGKY+RVC L+I DPGDSDII T
Sbjct: 85 CGKYFRVCCLSIIDPGDSDIIKT 107
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -3
Query: 364 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTFDKAK 239
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+T +K
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSK 42
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
AKRAFVHWYVGEGMEEGEFS+
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSE 420
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMD 565
EAREDLAALEKDYEEVG +
Sbjct: 420 EAREDLAALEKDYEEVGAE 438
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
AKRAFVHWYVGEGMEEGEFS+
Sbjct: 481 AKRAFVHWYVGEGMEEGEFSE 501
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMD 565
EAREDLAALEKDYEEVG +
Sbjct: 501 EAREDLAALEKDYEEVGAE 519
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
+KRAFVHWYVGEGMEEGEFS+
Sbjct: 400 SKRAFVHWYVGEGMEEGEFSE 420
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMD 565
EAREDLAALEKDYEEVG +
Sbjct: 420 EAREDLAALEKDYEEVGSE 438
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
+KRAFVHWYVGEGMEEGEFS+
Sbjct: 400 SKRAFVHWYVGEGMEEGEFSE 420
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMDS 568
EAREDLAALEKDYEEVG +S
Sbjct: 420 EAREDLAALEKDYEEVGAES 439
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 571 RKAFLHWYTGEGMDEMEFTE 590
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 412 RKAFLHWYTGEGMDEMEFTE 431
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY EGM+E EF++
Sbjct: 407 RKAFLHWYTSEGMDEMEFTE 426
>03_01_0642 -
4702726-4703052,4703127-4703193,4703280-4703360,
4703582-4703718,4703936-4704143,4704664-4704891,
4705310-4705450,4705538-4705794
Length = 481
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -3
Query: 595 FGSLTLAFSGVHADFFVILLEGSQVLTGFENSPSSIPSPTYQ 470
FG++ + H D F++ L +Q+L+ + S S+PS TY+
Sbjct: 184 FGNICKPLTWSHGDIFLMCLSSAQILSAYILSQESLPS-TYK 224
>03_06_0709 -
35670153-35670350,35671206-35671259,35672444-35672527,
35672688-35672902,35673959-35674058,35674178-35674276
Length = 249
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 577 AFSGVHADFFVILLEGSQVLTGFENSPSSIPSPTYQCTKARLASRSTSFI 428
+F G ADFF +LL G+ VLTG IP + + S S +F+
Sbjct: 88 SFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFM 137
>01_06_1014 - 33810112-33811995
Length = 627
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 435 EVDLEAKRAFVHWYVGEGM 491
E + +KRA +HW++GEG+
Sbjct: 182 ENSIISKRAMIHWWIGEGL 200
>04_03_0771 + 19434460-19434987
Length = 175
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 368 GSVNANESKSTNGKEAAQNSNERGRSRGQA 457
G V A E+++ + +E A++ + RGR+ G+A
Sbjct: 67 GEVRAGEAEADSTREEAEHGHHRGRAGGEA 96
>11_06_0231 + 21531169-21531674,21533607-21533681,21535426-21535741
Length = 298
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 308 FGDEIGKILLRIQANFENLRQGKAKLVIIAK-NAPPLRKSEIEYYAL 171
FG E+GK+ N + + +GK K +I + P ++K EI +++L
Sbjct: 42 FGMEVGKLTELRMLNIKGIDEGKWKALIQSVFMLPRIQKLEISFFSL 88
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 402 MEKKRLKTQMKEVDLEAKRAFVHWYVGEGMEEGEFSKPVRTWLPSRRITKKSAWTPLKAR 581
+EKKRLK + K ++ E + GEG+ E + PS SA P R
Sbjct: 1451 LEKKRLKKEKKRMEKEKGKKQKE---GEGVSSSEQKNTAK---PSDSQGTSSARPPAPMR 1504
Query: 582 VREPK 596
+ EPK
Sbjct: 1505 IPEPK 1509
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,160,245
Number of Sequences: 37544
Number of extensions: 385308
Number of successful extensions: 1120
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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