Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20622
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi... 124 7e-29
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi... 124 7e-29
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi... 123 1e-28
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 49 3e-06
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 49 3e-06
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 49 3e-06
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 49 3e-06
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 49 3e-06
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 48 6e-06
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 36 0.019
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 36 0.019
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 36 0.019
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 36 0.019
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 36 0.019
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 36 0.019
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 36 0.019
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 36 0.019
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 36 0.019
At2g36450.1 68415.m04474 AP2 domain-containing protein low simil... 30 1.7
At4g04860.1 68417.m00708 Der1-like family protein / degradation ... 29 2.2
At1g34630.1 68414.m04305 expressed protein 29 2.2
At4g17220.1 68417.m02590 expressed protein 29 3.8
At5g03910.1 68418.m00371 ABC transporter family protein ABC-type... 28 5.0
At4g21810.1 68417.m03155 Der1-like family protein / degradation ... 28 5.0
At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOA... 28 6.7
At1g05180.2 68414.m00521 auxin-resistance protein AXR1 (AXR1) id... 28 6.7
At1g05180.1 68414.m00522 auxin-resistance protein AXR1 (AXR1) id... 28 6.7
At1g33720.1 68414.m04169 cytochrome P450, putative similar to SP... 27 8.8
>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
luteus]
Length = 112
Score = 124 bits (298), Expect = 7e-29
Identities = 54/85 (63%), Positives = 68/85 (80%)
Frame = -2
Query: 293 GKILLRIQANFENLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTA 114
GK L ++ ++LR K KL++I+ N PPLR+SEIEYYA+LAK GVH Y+GNN++LGTA
Sbjct: 25 GKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTA 84
Query: 113 CGKYYRVCTLAITDPGDSDIITTLP 39
CGKY+RV L+I DPGDSDII TLP
Sbjct: 85 CGKYFRVSCLSIVDPGDSDIIKTLP 109
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = -3
Query: 364 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTFDKAK 239
MVA KK KK+ E INSRLALVMKSGKY LGYK LK+ +K
Sbjct: 1 MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSK 42
>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
to ribosomal protein L30 GI:388034 from [Homo sapiens]
Length = 112
Score = 124 bits (298), Expect = 7e-29
Identities = 57/105 (54%), Positives = 76/105 (72%)
Frame = -2
Query: 353 KETEKDHRVN*LPPCFGDEIGKILLRIQANFENLRQGKAKLVIIAKNAPPLRKSEIEYYA 174
K+T+K H + GK L ++ ++LR K KL++I+ N PPLR+SEIEYYA
Sbjct: 5 KKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEYYA 64
Query: 173 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 39
+LAK GVHHY+GNN++LGTACGKY+RV L+I DPGDSDII ++P
Sbjct: 65 MLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = -3
Query: 364 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTFDKAK 239
MV KK KK+ E INSRLALVMKSGKY LGYK LK+ +K
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSK 42
>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
to GI:6984132 from [Euphorbia esula]
Length = 112
Score = 123 bits (296), Expect = 1e-28
Identities = 57/106 (53%), Positives = 76/106 (71%)
Frame = -2
Query: 356 SKETEKDHRVN*LPPCFGDEIGKILLRIQANFENLRQGKAKLVIIAKNAPPLRKSEIEYY 177
+K+T+K H + GK L ++ ++LR K KL++I+ N PPLR+SEIEYY
Sbjct: 4 AKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYY 63
Query: 176 ALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 39
A+LAK GVHHY+ NN++LGTACGKY+RV L+I DPGDSDII +LP
Sbjct: 64 AMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -3
Query: 364 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTFDKAK 239
MVAAKK KK+ E INSRLALVMKSGKY LGYK LK+ +K
Sbjct: 1 MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSK 42
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
AKRAFVHWYVGEGMEEGEFS+
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSE 420
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMD 565
EAREDLAALEKDYEEVG +
Sbjct: 420 EAREDLAALEKDYEEVGAE 438
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
AKRAFVHWYVGEGMEEGEFS+
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSE 420
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMD 565
EAREDLAALEKDYEEVG +
Sbjct: 420 EAREDLAALEKDYEEVGAE 438
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
AKRAFVHWYVGEGMEEGEFS+
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSE 420
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMD 565
EAREDLAALEKDYEEVG +
Sbjct: 420 EAREDLAALEKDYEEVGAE 438
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
AKRAFVHWYVGEGMEEGEFS+
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSE 420
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMD 565
EAREDLAALEKDYEEVG +
Sbjct: 420 EAREDLAALEKDYEEVGAE 438
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
AKRAFVHWYVGEGMEEGEFS+
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSE 420
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVGMD 565
EAREDLAALEKDYEEVG +
Sbjct: 420 EAREDLAALEKDYEEVGAE 438
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +3
Query: 450 AKRAFVHWYVGEGMEEGEFSK 512
+KRAFVHWYVGEGMEEGEFS+
Sbjct: 400 SKRAFVHWYVGEGMEEGEFSE 420
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +2
Query: 509 EAREDLAALEKDYEEVG 559
EAREDLAALEKDYEEVG
Sbjct: 420 EAREDLAALEKDYEEVG 436
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 391 RKAFLHWYTGEGMDEMEFTE 410
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 392 RKAFLHWYTGEGMDEMEFTE 411
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 453 KRAFVHWYVGEGMEEGEFSK 512
++AF+HWY GEGM+E EF++
Sbjct: 392 RKAFLHWYTGEGMDEMEFTE 411
>At2g36450.1 68415.m04474 AP2 domain-containing protein low
similarity to DREB1B GI:3738226 from [Arabidopsis
thaliana]; contains Pfam profile PF00847: AP2 domain
Length = 184
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 583 TLAFSGVHADFFVILLEGSQVLTGFENSPSSIPSPT 476
T + + D + L+GSQ F NS SS+P+PT
Sbjct: 47 TPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPT 82
>At4g04860.1 68417.m00708 Der1-like family protein / degradation in
the ER-like family protein contains Pfam profile:
PF04511 Der1-like family
Length = 244
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 577 AFSGVHADFFVILLEGSQVLTGFENSPSSIPSPTYQCTKARLASRSTSFI 428
+F G ADF +LL G+ VLTG IP + K S S +F+
Sbjct: 88 SFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFM 137
>At1g34630.1 68414.m04305 expressed protein
Length = 481
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 595 FGSLTLAFSGVHADFFVILLEGSQVLTGFENSPSSIPS 482
FG++ + H D F++ L SQ+L+ + S+PS
Sbjct: 194 FGTICKPLTWKHGDLFLMCLSSSQILSAYILKQESLPS 231
>At4g17220.1 68417.m02590 expressed protein
Length = 513
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 405 EKKRLKTQMKEVDLEAKRAFVHWYVGEGMEEGEFSKPVRTWLPSRRI 545
EK+ L+ ++ V + A R + E +E + PV+ WL RRI
Sbjct: 239 EKRTLERELARVKVSASRVALA-VANEWKDENDRVMPVKQWLEERRI 284
>At5g03910.1 68418.m00371 ABC transporter family protein ABC-type
transport protein sll1276, Synechocystis sp., PIR:S77239
Length = 634
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 498 PPPYPHRRTSA--RKHAW-PLDRPLSF 427
PPP HRR+S+ KH + P RPLSF
Sbjct: 16 PPPLSHRRSSSLFLKHPFQPSPRPLSF 42
>At4g21810.1 68417.m03155 Der1-like family protein / degradation in
the ER-like family protein contains Pfam profile:
PF04511 Der1-like family
Length = 244
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 577 AFSGVHADFFVILLEGSQVLTGFENSPSSIPSPTYQCTKARLASRSTSFI 428
+F G DF +LL G+ VLTG IP + +K S S +F+
Sbjct: 88 SFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFM 137
>At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related contains
similarity to wax synthase wax synthase - Simmondsia
chinensis, PID:g5020219 similar to wax synthase
[gi:5020219] from Simmondsia chinensis
Length = 346
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 685 LFDTSFFYFISPECKTVRVRHKRYFIGLVLFGSLTLAFSGVHADFFV 545
+ ++ Y+++P+ KT +R VLF + + FS VH+ F +
Sbjct: 16 IISVTYCYYLTPKIKTSLLRLLSVLPVCVLFLIIPIFFSTVHSSFTI 62
>At1g05180.2 68414.m00521 auxin-resistance protein AXR1 (AXR1)
identical to SP|P42744 Auxin-resistance protein AXR1
{Arabidopsis thaliana}; contains Pfam profile PF00899:
ThiF family; identical to cDNA ubiquitin activating
enzyme E1-related protein (AXR1) GI:304103
Length = 436
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 559 ADFFVILLEGSQVLTGFENSPSSIPSPTYQ--CTKAR 455
ADF VI +L PSSIP PT + C AR
Sbjct: 253 ADFLVIEERVKNILKKIGRDPSSIPKPTIKSFCKNAR 289
>At1g05180.1 68414.m00522 auxin-resistance protein AXR1 (AXR1)
identical to SP|P42744 Auxin-resistance protein AXR1
{Arabidopsis thaliana}; contains Pfam profile PF00899:
ThiF family; identical to cDNA ubiquitin activating
enzyme E1-related protein (AXR1) GI:304103
Length = 540
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 559 ADFFVILLEGSQVLTGFENSPSSIPSPTYQ--CTKAR 455
ADF VI +L PSSIP PT + C AR
Sbjct: 357 ADFLVIEERVKNILKKIGRDPSSIPKPTIKSFCKNAR 393
>At1g33720.1 68414.m04169 cytochrome P450, putative similar to
SP|O64636 Cytochrome P450 76C1 (EC 1.14.-.-)
{Arabidopsis thaliana}; contains Pfam profile PF00067:
Cytochrome P450
Length = 511
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 578 RLQRSPCRLLRNPSRGQPGPHGLRELSLLHTLTDVPVHEST 456
R +RSPC+L ++P PGP L + +H + P H T
Sbjct: 27 RSRRSPCQLSKSP----PGPPRLPIIGNIHLVGKNPHHSFT 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,563
Number of Sequences: 28952
Number of extensions: 304253
Number of successful extensions: 957
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -