Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20619
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 120 1e-27
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 103 1e-22
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 32 0.53
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 32 0.53
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.92
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.92
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10) 31 0.92
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.92
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.92
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03) 30 1.6
SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84) 29 3.7
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 29 4.9
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 29 4.9
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 6.5
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 8.6
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 120 bits (289), Expect = 1e-27
Identities = 52/66 (78%), Positives = 61/66 (92%)
Frame = +1
Query: 511 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 690
VFGA+KGAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S
Sbjct: 191 VFGALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEES 250
Query: 691 FKRQFS 708
+KRQFS
Sbjct: 251 YKRQFS 256
Score = 94.3 bits (224), Expect = 9e-20
Identities = 45/84 (53%), Positives = 52/84 (61%)
Frame = +2
Query: 257 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 436
++ +AY+HELP +GVKVGLTNYAAAY TG EYNVE
Sbjct: 106 VLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVE 165
Query: 437 PVDNGPGAFRCYLDVGLARTTTGA 508
VD PGAFRC+LDVGLART+TGA
Sbjct: 166 SVDGSPGAFRCFLDVGLARTSTGA 189
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +3
Query: 102 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 227
RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 103 bits (247), Expect = 1e-22
Identities = 49/84 (58%), Positives = 54/84 (64%)
Frame = +2
Query: 257 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 436
I+CAAY+HELPRYGVKVGLTNYAAAY TG EYNVE
Sbjct: 11 IICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVE 70
Query: 437 PVDNGPGAFRCYLDVGLARTTTGA 508
+D PGAFRC+LDVGLART+TGA
Sbjct: 71 SIDGSPGAFRCFLDVGLARTSTGA 94
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 511 VFGAMKGAVDGGLNVPH 561
VFGA+KGAVDGGL +PH
Sbjct: 96 VFGALKGAVDGGLEIPH 112
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 377 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYVTFNPRVGHLACYIF 210
++ + ++L D ++ L PS A+ +NKQ T+YV+F P G LA F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 377 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYVTFNPRVGHLACYIF 210
++ + ++L D ++ L PS A+ +NKQ T+YV+F P G LA F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 606 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAK 484
+ FGF + E D MR + +T++S APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604
>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 606 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAK 484
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 606 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAK 484
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 606 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAK 484
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
Length = 475
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 606 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAK 484
+ FGF + E D MR + +T++S APV++R K
Sbjct: 365 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 405
>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 780
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 606 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAK 484
+ FGF + E D MR + +T++S APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 606 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAK 484
+ FGF + E D MR + +T++S APV++R K
Sbjct: 881 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 606 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAK 484
+ FGF + E D MR + +T++S APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199
>SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)
Length = 327
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 377 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYVTFNPRVGHLACYIF 210
++ + ++L D ++ L P+ A+ +NKQ T+YV+F P G LA F
Sbjct: 179 KIRQTEWMLNIDLVSFALSELEFSPNIDLFASRLNKQFTRYVSFKPDPGALAVDTF 234
>SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +3
Query: 45 FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQD-KNKYNTP--KYRLIVR---LS 206
F K K Y + Q + + R EGK+ + +R+ + N N P K + V LS
Sbjct: 43 FGKHFKGSLYIESTQRQKEERTEGKSAKHKDERVGKRCILNGLNVPQCKNSIYVNYELLS 102
Query: 207 NKDVTCQVAYSRIEGDILCAL 269
K++TC + +GDIL L
Sbjct: 103 QKEITCPYTFPEGDGDILITL 123
>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
Length = 496
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 368 EAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYVTFNPRVGHLACYIF 210
E ++L D L L +PS A+ VNKQ YV++ P G LA F
Sbjct: 183 ENEWMLDTDILTNAIEKLGVEPSVDLFASRVNKQFPAYVSYRPDPGALAIDAF 235
>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1418
Score = 28.7 bits (61), Expect = 4.9
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = +3
Query: 177 PKYRLIVRLSNKDVTCQVAYSRIEGDILCALLIHMSCHVMV*RLV*QIMLQHIQLVCY*H 356
P+Y+ I++ SN + A + L L MSC + R++ Q+ L I + H
Sbjct: 839 PQYKRILKYSNSSQSISTAINEFTNGCLKKLTYTMSCRLRTLRMIRQLKLTLINDL---H 895
Query: 357 EDCFKDLDLTPYTLAQQMSQVMNTMLNLST 446
+ F T TL S + +L LST
Sbjct: 896 QPLF-----TIITLVLPSSTFITLVLPLST 920
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +3
Query: 108 REGKTDYYARKRLV-----VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDILCALL 272
+EGK + A+KR V++ RL+ +++V+C++ Y +++G++ C L+
Sbjct: 162 KEGKLHFEAKKRNAPALPPVRELKLDEEVSCRLVHLQLDEEVSCRLVYLQLDGEVSCRLV 221
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 586 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 705
D+ K+ NAE+ RA +++ ++S D+E + R+F
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKF 196
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 125 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 18
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 57 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 152
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 42 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 128
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,263,286
Number of Sequences: 59808
Number of extensions: 469039
Number of successful extensions: 1247
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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