Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20619
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   137   6e-33
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     29   3.3  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    29   3.3  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  137 bits (332), Expect = 6e-33
 Identities = 61/76 (80%), Positives = 69/76 (90%)
 Frame = +3

Query: 39  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 218
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 219 TCQVAYSRIEGDILCA 266
             Q+AYS+IEGD++ A
Sbjct: 61  VAQLAYSKIEGDVVVA 76



 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +1

Query: 511 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 690
           +F  MKG  DGG+NVPHS  RF G+D ESK++NAE HR  I G HVA+YM  L+++DED 
Sbjct: 158 IFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDR 217

Query: 691 FKRQFS 708
           +KRQFS
Sbjct: 218 YKRQFS 223



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 39/84 (46%), Positives = 48/84 (57%)
 Frame = +2

Query: 257 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 436
           +V +AYSHELPRYG+KVGLTNYAAAY+TG                          +YNVE
Sbjct: 74  VVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE 133

Query: 437 PVDNGPGAFRCYLDVGLARTTTGA 508
             +     F+  LD+GLARTTTG+
Sbjct: 134 E-EGDRAPFKAVLDIGLARTTTGS 156


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 600 FGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAKPTSK*HLNAPGPLST 439
           F + ++   SF   R   +T  S   SS+ T+     +  TS   +NAP P +T
Sbjct: 12  FRYSVLTTSSFSSWRR-SSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 600 FGFCIIARESFDGMRNIEATVNSTLHSSKDTAPVVVRAKPTSK*HLNAPGPLST 439
           F + ++   SF   R   +T  S   SS+ T+     +  TS   +NAP P +T
Sbjct: 12  FRYSVLTTSSFSSWRR-SSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,334
Number of Sequences: 27780
Number of extensions: 350910
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)