Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20619
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.31 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.31 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.7  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 60  KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 185
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 60  KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 185
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 268 SAHNMSPSIRE-*ATWHVTSLLERRT 194
           S HNMSP +R+    W    L+ RRT
Sbjct: 342 STHNMSPWVRQVFLNWMPRLLMMRRT 367


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 120 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAY 236
           TD   RK ++ +++ K ++    ++V + N+D    +AY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAY 326


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 356  VLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQ 258
            V+   +   L   +S    HHNV  H    RTQ
Sbjct: 1661 VISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQ 1693


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 564 GMRNIEATVNSTLHSSKD 511
           GM NIE  + +T +SSK+
Sbjct: 193 GMNNIETYIVNTNYSSKN 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,295
Number of Sequences: 438
Number of extensions: 4244
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)