Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20618
(715 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 162 7e-39
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 155 8e-37
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 154 2e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 143 3e-33
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 133 4e-30
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 124 3e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 121 2e-26
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 118 1e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 113 5e-24
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 113 5e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 110 4e-23
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 89 8e-17
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 84 4e-15
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 79 1e-13
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 75 1e-12
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 72 1e-11
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 71 4e-11
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 66 1e-09
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 64 3e-09
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 60 5e-08
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 57 4e-07
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 57 5e-07
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 56 1e-06
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 54 3e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 54 3e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 5e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 5e-06
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 50 6e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 49 1e-04
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 48 3e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 47 5e-04
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 45 0.002
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 42 0.015
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 40 0.046
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 40 0.061
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 34 3.0
UniRef50_A7CME0 Cluster: Putative uncharacterized protein precur... 34 3.0
UniRef50_Q9P557 Cluster: Related to merozoite surface antigen 2;... 34 3.0
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_Q24UZ7 Cluster: Bifunctional protein folD 2 [Includes: ... 34 4.0
UniRef50_A4X7G0 Cluster: Putative uncharacterized protein; n=1; ... 33 7.0
UniRef50_A1K510 Cluster: Conserved hypothetical membrane protein... 33 7.0
UniRef50_P70983 Cluster: Alkaline amylopullulanase; n=2; Bacillu... 33 9.2
UniRef50_Q9Y8V1 Cluster: Putative uncharacterized protein; n=1; ... 33 9.2
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.2
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 162 bits (394), Expect = 7e-39
Identities = 75/84 (89%), Positives = 78/84 (92%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
ARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV
Sbjct: 2 ARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEV 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
KIV QRL+KVDGKVRTDPTYPAG
Sbjct: 62 TKIVMQRLVKVDGKVRTDPTYPAG 85
Score = 138 bits (334), Expect = 1e-31
Identities = 61/83 (73%), Positives = 71/83 (85%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRT
Sbjct: 87 MDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKI 504
IRYPDPLI NDS+Q+DIA+ KI
Sbjct: 147 IRYPDPLIHANDSVQVDIASGKI 169
Score = 132 bits (319), Expect = 8e-30
Identities = 59/68 (86%), Positives = 63/68 (92%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG
Sbjct: 172 YIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKG 231
Query: 690 TKAYISLP 713
K YISLP
Sbjct: 232 NKPYISLP 239
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 155 bits (377), Expect = 8e-37
Identities = 71/84 (84%), Positives = 76/84 (90%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
KI QR IK+DGKVRTD TYPAG
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPAG 85
Score = 140 bits (339), Expect = 3e-32
Identities = 61/83 (73%), Positives = 72/83 (86%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RT
Sbjct: 87 MDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDART 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKI 504
IRYPDPLIKVND+IQ+D+ T KI
Sbjct: 147 IRYPDPLIKVNDTIQIDLETGKI 169
Score = 119 bits (287), Expect = 6e-26
Identities = 48/68 (70%), Positives = 62/68 (91%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF++GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG
Sbjct: 172 FIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 231
Query: 690 TKAYISLP 713
K +ISLP
Sbjct: 232 NKPWISLP 239
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 154 bits (373), Expect = 2e-36
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
KI QR IK+DGKVRTD TYP G
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTG 85
Score = 119 bits (286), Expect = 8e-26
Identities = 47/68 (69%), Positives = 62/68 (91%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG
Sbjct: 204 FIKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKG 263
Query: 690 TKAYISLP 713
K ++SLP
Sbjct: 264 NKPWVSLP 271
Score = 81.4 bits (192), Expect(2) = 5e-27
Identities = 33/50 (66%), Positives = 43/50 (86%)
Frame = +1
Query: 355 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKI 504
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKI 201
Score = 62.9 bits (146), Expect(2) = 5e-27
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 357
MDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 87 MDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 143 bits (347), Expect = 3e-33
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 124 bits (300), Expect = 2e-27
Identities = 58/95 (61%), Positives = 69/95 (72%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSPGTCV 540
IRYPDPLIK ND+I+LD+ KI+ G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 107 bits (257), Expect = 3e-22
Identities = 46/68 (67%), Positives = 57/68 (83%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231
Query: 690 TKAYISLP 713
TK ++SLP
Sbjct: 232 TKPWVSLP 239
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 133 bits (322), Expect = 4e-30
Identities = 59/98 (60%), Positives = 70/98 (71%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
ARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV
Sbjct: 2 ARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREV 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAGLWMLSQLRRLMNCF 295
IVK R IK+DGK+RTD YP G + + R F
Sbjct: 62 TMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 103 bits (248), Expect = 3e-21
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
F+KF+ GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKG
Sbjct: 172 FVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKG 231
Query: 690 TKAYISLP 713
T+ ++LP
Sbjct: 232 TETLVNLP 239
Score = 101 bits (241), Expect = 2e-20
Identities = 44/84 (52%), Positives = 64/84 (76%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRT
Sbjct: 87 MDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKIM 507
IRYP P ++ ND+I+L++ T KI+
Sbjct: 147 IRYPHPELQANDTIKLNLETGKIV 170
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 124 bits (298), Expect = 3e-27
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
A P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 AHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 182 LKIVKQRLIKVDGK 223
KI Q IK+DGK
Sbjct: 62 KKIRMQHFIKMDGK 75
Score = 112 bits (270), Expect = 7e-24
Identities = 45/68 (66%), Positives = 59/68 (86%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
F KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGKG
Sbjct: 144 FFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 203
Query: 690 TKAYISLP 713
+ISLP
Sbjct: 204 NIPWISLP 211
Score = 107 bits (258), Expect = 2e-22
Identities = 46/66 (69%), Positives = 56/66 (84%)
Frame = +1
Query: 307 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 486
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 487 IATTKI 504
+ T KI
Sbjct: 136 LETGKI 141
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 121 bits (292), Expect = 2e-26
Identities = 60/82 (73%), Positives = 66/82 (80%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV
Sbjct: 13 AFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEV 71
Query: 182 LKIVKQRLIKVDGKVRTDPTYP 247
KI Q IKVDGK+RTD P
Sbjct: 72 KKICMQWFIKVDGKIRTDNNLP 93
Score = 117 bits (281), Expect = 3e-25
Identities = 52/90 (57%), Positives = 67/90 (74%)
Frame = +1
Query: 241 LSCWIMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 420
L WIMDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 421 HDGRTIRYPDPLIKVNDSIQLDIATTKIMA 510
HD T+R+PD LIKVND+IQ+D+ T KI A
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKITA 181
Score = 83.0 bits (196), Expect = 7e-15
Identities = 35/67 (52%), Positives = 50/67 (74%)
Frame = +3
Query: 513 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 692
+KF++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG
Sbjct: 182 LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGN 237
Query: 693 KAYISLP 713
K +ISLP
Sbjct: 238 KPWISLP 244
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 118 bits (285), Expect = 1e-25
Identities = 56/92 (60%), Positives = 67/92 (72%)
Frame = +2
Query: 20 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 199
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 200 RLIKVDGKVRTDPTYPAGLWMLSQLRRLMNCF 295
RL+KVDGKVRT+ YP GL + +L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 101 bits (241), Expect = 2e-20
Identities = 41/84 (48%), Positives = 63/84 (75%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGR
Sbjct: 100 LMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGR 159
Query: 433 TIRYPDPLIKVNDSIQLDIATTKI 504
TI Y DP ++V+D+++ +I T ++
Sbjct: 160 TISYVDPSVRVHDALKFNIKTGEV 183
Score = 81.4 bits (192), Expect = 2e-14
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +3
Query: 513 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 692
IKF+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 187 IKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENE 246
Query: 693 KAYISLP 713
ISLP
Sbjct: 247 HPLISLP 253
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 113 bits (271), Expect = 5e-24
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 2 SRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRES 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAGL 256
L I+K+ I VDGKVR D +PAG+
Sbjct: 62 LNILKKNEIYVDGKVRADKNFPAGV 86
Score = 111 bits (266), Expect = 2e-23
Identities = 52/97 (53%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGR
Sbjct: 86 VMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGR 145
Query: 433 TIRYPDPLIKVNDSIQLDIATTKIMASSSLSPGT-CV 540
TIR+P+ LIK NDSI LD+ K++ S G+ CV
Sbjct: 146 TIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 76.2 bits (179), Expect = 8e-13
Identities = 33/68 (48%), Positives = 48/68 (70%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGKG
Sbjct: 172 FIKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKG 231
Query: 690 TKAYISLP 713
TK++ISLP
Sbjct: 232 TKSFISLP 239
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 113 bits (271), Expect = 5e-24
Identities = 52/80 (65%), Positives = 59/80 (73%)
Frame = +2
Query: 14 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 193
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 194 KQRLIKVDGKVRTDPTYPAG 253
+Q L+ VD R D YPAG
Sbjct: 63 RQGLVHVDNHPRRDGKYPAG 82
Score = 83.8 bits (198), Expect = 4e-15
Identities = 40/82 (48%), Positives = 51/82 (62%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG
Sbjct: 84 MDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHR 143
Query: 436 IRYPDPLIKVNDSIQLDIATTK 501
IRYPDP + D+I ++ K
Sbjct: 144 IRYPDPHTSIGDTIVYNVKEKK 165
Score = 72.1 bits (169), Expect = 1e-11
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = +3
Query: 513 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 686
IK G ++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK
Sbjct: 170 IKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGK 227
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 110 bits (264), Expect = 4e-23
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 433 TIRYPDPLIKVNDSIQLDIATTKIMASSSLSPG 531
TIR+P+P IK+ D+++ D+ KI + L G
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 90.2 bits (214), Expect = 4e-17
Identities = 38/68 (55%), Positives = 50/68 (73%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
F ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+G
Sbjct: 284 FAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQG 343
Query: 690 TKAYISLP 713
K++I LP
Sbjct: 344 KKSWIELP 351
Score = 86.2 bits (204), Expect = 7e-16
Identities = 56/129 (43%), Positives = 71/129 (55%), Gaps = 31/129 (24%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 94
ARGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 95 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGLWMLS 268
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP GL +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVV 202
Query: 269 QLRRLMNCF 295
++ + F
Sbjct: 203 RIEKTDQSF 211
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 89.4 bits (212), Expect = 8e-17
Identities = 40/84 (47%), Positives = 57/84 (67%)
Frame = +2
Query: 8 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 187
G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+
Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSI 63
Query: 188 IVKQRLIKVDGKVRTDPTYPAGLW 259
I+ ++ IKV+G+VRT+ +P GL+
Sbjct: 64 ILAEKNIKVNGRVRTNSHFPVGLF 87
Score = 74.9 bits (176), Expect = 2e-12
Identities = 36/85 (42%), Positives = 58/85 (68%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+ DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 433 TIRYPDPLIKVNDSIQLDIATTKIM 507
+IR+ DP I + +I++ T+K++
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVI 169
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 83.8 bits (198), Expect = 4e-15
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +2
Query: 8 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 184
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 185 KIVKQRLIKVDGKVRTDPTYPAGLWMLSQLRR 280
KI+ + I VDG VR +P +P G+ + ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 41.9 bits (94), Expect = 0.015
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +1
Query: 235 PYLSCWIMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 414
P IMDVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 415 VTHDGRT--IRYPDP------LIKVNDSIQLDI 489
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 79.0 bits (186), Expect = 1e-13
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +2
Query: 5 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 184
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 185 KIVKQRLIKVDGKVRTDPTYPAGL 256
KI++ I +DG R + +PAGL
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGL 87
Score = 42.3 bits (95), Expect = 0.011
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 507 GFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 686
G + F G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 178 GHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2
Query: 20 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 196
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 197 QRLIKVDGKVRTDPTYPAGL 256
+ +KVDG VR D +P GL
Sbjct: 63 RGYVKVDGVVRRDYKFPVGL 82
Score = 40.3 bits (90), Expect = 0.046
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MDV+ I T E++R++ D + + I+ EEA KL +V+ L HDGR
Sbjct: 82 LMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGR 141
Query: 433 ---TIRYPDPLIKVNDSIQLDIATTKIMASSSLSPG 531
T IK DS+ D+ I A L G
Sbjct: 142 NLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLG 177
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 72.1 bits (169), Expect = 1e-11
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +2
Query: 20 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 199
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 200 RLIKVDGKVRTDPTYPAGLWMLSQL 274
+KVDGKVR D YP GL + +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
Score = 35.9 bits (79), Expect = 0.99
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MDV+ + NE +R+I D RI EA K+C+++ L HDGR
Sbjct: 81 LMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGR 140
Query: 433 TI 438
I
Sbjct: 141 NI 142
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +2
Query: 5 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 184
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 185 KIVKQRLIKVDGKVRTDPTYPAGL 256
+I+ R+I+VDG+V TD +P GL
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGL 89
Score = 40.7 bits (91), Expect = 0.035
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MDV+ I + +R++ D + I PEEA YKL +++R T HDGR
Sbjct: 89 LMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGR 148
Query: 433 TI 438
+
Sbjct: 149 NV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +2
Query: 8 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 187
G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K
Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARK 64
Query: 188 IVKQRLIKVDGKVRTDPTYPAG 253
++ + +VDG VR D +P G
Sbjct: 65 LISEGHFRVDGVVRKDYKFPVG 86
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +3
Query: 507 GFIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIG 683
G IKF G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG 239
Query: 684 KGTKAYISLP 713
+ ISLP
Sbjct: 240 L-DRPVISLP 248
Score = 39.5 bits (88), Expect = 0.080
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
MDV+ + T E FR++ Y VK F +H I EE K +++ T L HDGR
Sbjct: 88 MDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGR 146
Query: 433 TI--RYPDPLIKVND 471
I R DP V D
Sbjct: 147 NILVRVKDPRNPVED 161
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +2
Query: 20 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 199
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 200 RLIKVDGKVRTDPTYPAGLW 259
+ VDGKVR D Y G++
Sbjct: 65 GKVLVDGKVRKDYRYTVGMF 84
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 60.1 bits (139), Expect = 5e-08
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +2
Query: 8 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 187
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 188 IVKQRLIKVDGKVRTDPTYPAG 253
I+ + VDG+V D +P G
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVG 86
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/95 (32%), Positives = 48/95 (50%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MD++ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+
Sbjct: 88 MDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKN 145
Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSPGTCV 540
+ + V D I L + +I L G CV
Sbjct: 146 VIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 57.2 bits (132), Expect = 4e-07
Identities = 31/79 (39%), Positives = 41/79 (51%)
Frame = +2
Query: 20 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 199
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 200 RLIKVDGKVRTDPTYPAGL 256
+ VDGKVR D YP GL
Sbjct: 63 GKVLVDGKVRRDYKYPVGL 81
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MDVV I + R+I D T I+ E+AKYK ++ T V L DGR
Sbjct: 81 LMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGR 140
Query: 433 TI 438
I
Sbjct: 141 NI 142
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 56.8 bits (131), Expect = 5e-07
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +2
Query: 20 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 199
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 200 RLIKVDGKVRTDPTYPAGL 256
R + VDG++ TD GL
Sbjct: 65 RQVLVDGRIETDLGRGVGL 83
Score = 39.9 bits (89), Expect = 0.061
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MDV+++ + + FR I DV G+ I+ + A KLC+V +T + HDGR
Sbjct: 83 LMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGR 140
Query: 433 TIRYPD-PLIKVNDSIQLDIATTKIMASSSLSPG 531
I D L D++ + + + S G
Sbjct: 141 NILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +2
Query: 20 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 199
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 200 RLIKVDGKVRTDPTYPAGLW 259
+ VDG R D +P GL+
Sbjct: 63 GKVLVDGISRKDLRFPVGLF 82
Score = 36.7 bits (81), Expect = 0.57
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+ DV+++ NE +R++ D KGR ++++ E KLC++ T L +DG
Sbjct: 81 LFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGT 139
Query: 433 TI 438
I
Sbjct: 140 NI 141
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 513 IKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 686
+KFE GNL M+ GG++ G G I+ RE + V I T F T + V +IG+
Sbjct: 166 LKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE 222
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +2
Query: 20 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 199
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 200 RLIKVDGKVRTDPTYPAGL 256
+ VDG R D +P GL
Sbjct: 64 GNVLVDGVARKDLRFPVGL 82
Score = 33.1 bits (72), Expect = 7.0
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 513 IKFESGNLCMITGGRNLGRVGTI 581
IK+E GNL MI GG + G VG+I
Sbjct: 167 IKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 14 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 190
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 191 VKQRLIKVDGKVRTDPTYPAGLW 259
+ + VDG+ D +P GL+
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLF 88
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 5e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +2
Query: 26 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 205
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 206 IKVDGKVRTD 235
+ ++G + TD
Sbjct: 64 VLLNGHIVTD 73
Score = 33.1 bits (72), Expect = 7.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 390
+ D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 80 VFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 53.6 bits (123), Expect = 5e-06
Identities = 32/92 (34%), Positives = 44/92 (47%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDV+ I E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 83 MDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSPG 531
D KV D + + KI + PG
Sbjct: 141 FITDDKSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 37.1 bits (82), Expect = 0.43
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 26 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 205
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 206 IKVDGKVRTDPTYPAG 253
+KVDGK + + G
Sbjct: 66 VKVDGKTVREKKFAVG 81
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/89 (31%), Positives = 48/89 (53%)
Frame = +2
Query: 17 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 196
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 197 QRLIKVDGKVRTDPTYPAGLWMLSQLRRL 283
QR + V+G+ D G++ + + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 41.5 bits (93), Expect = 0.020
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+ D+VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 433 TIRYPDPLIKVNDSIQLDIAT 495
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
Score = 39.5 bits (88), Expect = 0.080
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 519 FESGNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKGT 692
+ GN+ MI GG++ G+VG IV R S ++ DS G F T VF++G+
Sbjct: 174 YAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRSA 233
Query: 693 KA 698
A
Sbjct: 234 IA 235
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +1
Query: 253 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 432
+MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D R
Sbjct: 86 LMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLR 145
Query: 433 TIRYPDPLIKVNDSIQLDIATTKIMASSSLSPGT-CV*SR 549
++ IKV DS+ + +I+ + G+ C+ +R
Sbjct: 146 ELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/77 (25%), Positives = 41/77 (53%)
Frame = +3
Query: 480 VRHCNYEDYGFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATR 659
++ N E +KFE G+LC+IT G++LG + I + ++H++ G +
Sbjct: 162 IKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKK 221
Query: 660 LNNVFIIGKGTKAYISL 710
+++ +IG+ + +SL
Sbjct: 222 CSDLLVIGESKTSILSL 238
Score = 42.3 bits (95), Expect = 0.011
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +2
Query: 2 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
A+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 2 AKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEA 61
Query: 182 LKIVKQRLIKVDGKVRTDPTYPAGL 256
K+VK + V+GK +P L
Sbjct: 62 QKVVKTGFLYVNGKKCLSHKFPISL 86
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/66 (40%), Positives = 36/66 (54%)
Frame = -3
Query: 710 QRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQV 531
+RD RL A D EHV + R + ++ GVL VHN EG + LA D V + DH Q
Sbjct: 43 KRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQS 102
Query: 530 PGLKLD 513
++LD
Sbjct: 103 ADVELD 108
Score = 35.9 bits (79), Expect = 0.99
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = -2
Query: 477 DGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 298
+G+ D + + +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 297 TKQFISLLN*DNI 259
+ FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +2
Query: 20 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 199
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 200 RLIKVDGKVRTDPTYPAGLW 259
+ ++GK +D P G++
Sbjct: 63 DNVLINGKAISDEERPVGMF 82
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/91 (23%), Positives = 45/91 (49%)
Frame = +2
Query: 26 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 205
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 206 IKVDGKVRTDPTYPAGLWMLSQLRRLMNCFV 298
+KVDG++ D +P G + + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 39.5 bits (88), Expect = 0.080
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGR 432
MDV+SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+
Sbjct: 84 MDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGK 142
Query: 433 TIRYPDPLIKVNDSIQLDIATTKI 504
TI I +D + + I +I
Sbjct: 143 TIVTDRKDINTSDVLLMKIPDLEI 166
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 41.9 bits (94), Expect = 0.015
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = -3
Query: 713 RQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQ 534
R+R RL LA+ EH+ Q + + G+L+V ++G + L D ++T V ++ H
Sbjct: 108 RKRYPRLCPLANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDN 167
Query: 533 VPGLKLDE 510
+P +K DE
Sbjct: 168 IPNIKFDE 175
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 40.3 bits (90), Expect = 0.046
Identities = 25/86 (29%), Positives = 37/86 (43%)
Frame = +2
Query: 17 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 196
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 197 QRLIKVDGKVRTDPTYPAGLWMLSQL 274
++VDG RT + GL + +L
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 39.9 bits (89), Expect = 0.061
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 26 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 205
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 206 IKVDGKV 226
+ VDGKV
Sbjct: 66 VMVDGKV 72
Score = 35.5 bits (78), Expect = 1.3
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 513 IKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
+KF GN ITGG ++G + TI S E + ++VH+ + F+T + VF++G
Sbjct: 167 LKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG-S 221
Query: 690 TKAYISLP 713
K S+P
Sbjct: 222 PKYTFSMP 229
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 34.3 bits (75), Expect = 3.0
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -2
Query: 690 CPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWCPHAPSYGL 550
C CR R RRC PWSP CAQ C + RDV +G C P Y L
Sbjct: 144 CRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARCECRPGYRL 193
>UniRef50_A7CME0 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12D
Length = 533
Score = 34.3 bits (75), Expect = 3.0
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 548 GRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ-RVHNRQGHEG 697
G+P + A HRV +E + R H+ + H+ EQ RVH R G EG
Sbjct: 317 GKPAVQALEAHRVDQERADRRRDAPHRNVQRFHVDARAEQERVHQRDGAEG 367
>UniRef50_Q9P557 Cluster: Related to merozoite surface antigen 2;
n=1; Neurospora crassa|Rep: Related to merozoite surface
antigen 2 - Neurospora crassa
Length = 388
Score = 34.3 bits (75), Expect = 3.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 511 SSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSP 654
S+S + T VT G+ P A P+P+T T+ P DTP P
Sbjct: 276 STSAAAATAAAPTNEVTDGLRKPDASAEQQPSPTTATTTTPPTDTPKP 323
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 33.9 bits (74), Expect = 4.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 542 DHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHE 694
DH R A HR R RL + H+G+ L+H++EQ +G +
Sbjct: 60 DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQK 110
>UniRef50_Q24UZ7 Cluster: Bifunctional protein folD 2 [Includes:
Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)];
n=4; Peptococcaceae|Rep: Bifunctional protein folD 2
[Includes: Methylenetetrahydrofolate dehydrogenase (EC
1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC
3.5.4.9)] - Desulfitobacterium hafniense (strain Y51)
Length = 284
Score = 33.9 bits (74), Expect = 4.0
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 328 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 507
I ++ EE K ++ + K PK LV D ++ Y KV+DS+ +D T +
Sbjct: 10 ISKVLKEEIKEEVKRWKEQGVNPKLAVVLVGDDPASVVYAKSKQKVSDSLGIDFELTVLP 69
Query: 508 ASSS 519
A SS
Sbjct: 70 ADSS 73
>UniRef50_A4X7G0 Cluster: Putative uncharacterized protein; n=1;
Salinispora tropica CNB-440|Rep: Putative
uncharacterized protein - Salinispora tropica CNB-440
Length = 295
Score = 33.1 bits (72), Expect = 7.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3
Query: 599 MSLAGHDGAHTPQVTASRDHTQVPGLKLD---EAIIFVVAMSNWM 474
+S+ HDG H Q TA+R + V L D A++ V +NW+
Sbjct: 31 ISVTPHDGVHRVQATATRAYDLVDALTADAHHTAVVLNVGQNNWL 75
>UniRef50_A1K510 Cluster: Conserved hypothetical membrane protein;
n=1; Azoarcus sp. BH72|Rep: Conserved hypothetical
membrane protein - Azoarcus sp. (strain BH72)
Length = 232
Score = 33.1 bits (72), Expect = 7.0
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 101 PHKLRECLPLV---IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGLWMLSQ 271
PH+ ECL + + L R KY L ++ ++ +++ L + +VR DP P LW L +
Sbjct: 129 PHENIECLEVFHACLLLGFRGKYLLDDSDRIRYLQRTLAQELQRVRGDPQTPPALWKLPE 188
>UniRef50_P70983 Cluster: Alkaline amylopullulanase; n=2;
Bacillus|Rep: Alkaline amylopullulanase - Bacillus sp
Length = 1938
Score = 32.7 bits (71), Expect = 9.2
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 343 PEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMASSSL 522
PE+ ++ + + TG YLVT DG+T DP V+ ++ T+ + S+S
Sbjct: 182 PEKERFTYT-LSDLPTGEHEYTYLVTVDGQTEEVTDPYNTVDGRSVVEYVTSDVQVSASF 240
Query: 523 SPGTCV*SREAV 558
P ++ AV
Sbjct: 241 IPAKVDYNQNAV 252
>UniRef50_Q9Y8V1 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 688
Score = 32.7 bits (71), Expect = 9.2
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 650 EGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLD--EAIIFVVAMSNW 477
+ +++G++D+ G G G HTP+V A + T PG A++ + + W
Sbjct: 505 KSLAKGMIDLLWSPGGGYFRLSPPGPHTPEVPAEAEDTAYPGAYATAIHALLLIHRATGW 564
Query: 476 MES 468
M++
Sbjct: 565 MKA 567
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.2
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 53 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 214
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,603,994
Number of Sequences: 1657284
Number of extensions: 17934593
Number of successful extensions: 56995
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 53625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56911
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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