Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20618
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   5e-41
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.9  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      28   6.5  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   8.6  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  164 bits (399), Expect = 5e-41
 Identities = 74/84 (88%), Positives = 78/84 (92%)
 Frame = +2

Query: 2   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
           ARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV
Sbjct: 426 ARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEV 485

Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
            KIVKQRLIK+DGKVRTD TYPAG
Sbjct: 486 KKIVKQRLIKIDGKVRTDTTYPAG 509



 Score =  129 bits (311), Expect = 3e-30
 Identities = 58/84 (69%), Positives = 70/84 (83%)
 Frame = +1

Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
           MDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RT
Sbjct: 511 MDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDART 570

Query: 436 IRYPDPLIKVNDSIQLDIATTKIM 507
           IRYPDP IKVND++ +DI T K++
Sbjct: 571 IRYPDPNIKVNDTVVIDIKTGKVI 594



 Score =  113 bits (272), Expect = 1e-25
 Identities = 45/68 (66%), Positives = 58/68 (85%)
 Frame = +3

Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
           +IKF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG
Sbjct: 596 YIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKG 655

Query: 690 TKAYISLP 713
            K Y+SLP
Sbjct: 656 NKPYVSLP 663


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 142 EES--SEVCFDRKRSPENCE 195
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 241 LSCWIMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 420
           L  W+    S  K N ++  I D+  R  I  +TP+    K C+V R++TGP    +++ 
Sbjct: 261 LGGWVATRASGMKKN-VYGNIEDIIVR--IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMG 317

Query: 421 HDG 429
            +G
Sbjct: 318 SEG 320


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 141 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 4
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 219 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 103
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -3

Query: 590 AGHDGAHTPQVTASRDHTQVPGLKLDEAIIFVVAMSNWMESLTLISGSG*RMVRPSCVTK 411
           +G +G  T    A +   +V G+  ++A I     + W  +L   S S      PSC T 
Sbjct: 72  SGVEGGETACKLARKWAYKVKGVPQNQAKIVFAENNFWGRTLAACSSSS----DPSCYTD 127

Query: 410 YGTFL 396
           YG F+
Sbjct: 128 YGPFM 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,515,331
Number of Sequences: 59808
Number of extensions: 588471
Number of successful extensions: 1732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)